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bioRxiv · 10.1101/2024.01.17.576110

Integrated cancer cell-specific single-cell RNA-seq datasets of immune checkpoint blockade-treated patients

Gondal, M. N.·Cieslik, M.·Chinnaiyan, A. M.
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Abstract

Immune checkpoint blockade (ICB) therapies have emerged as a promising avenue for the treatment of various cancers. Despite their success, the efficacy of these treatments is variable across patients and cancer types. Numerous single-cell RNA-sequencing (scRNA-seq) studies have been conducted to unravel cell-specific responses to ICB treatment. However, these studies are limited in their sample sizes and require advanced coding skills for exploration. Here, we have compiled eight scRNA-seq datasets from nine cancer types, encompassing 174 patients, and 90,270 cancer cells. This compilation forms a unique resource tailored for investigating how cancer cells respond to ICB treatment across cancer types. We meticulously curated, quality-checked, pre-processed, and analyzed the data, ensuring easy access for researchers. Moreover, we designed a user-friendly interface for seamless exploration. By sharing the code and data for creating these interfaces, we aim to assist fellow researchers. These resources offer valuable support to those interested in leveraging and exploring single-cell datasets across diverse cancer types, facilitating a comprehensive understanding of ICB responses.

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Gondal, M. N., Cieslik, M., Chinnaiyan, A. M.. 2024-01-22. Integrated cancer cell-specific single-cell RNA-seq datasets of immune checkpoint blockade-treated patients. https://doi.org/10.1101/2024.01.17.576110

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