bioRxiv Science⌕ Search

bioRxiv · 10.1101/2023.12.22.573122

Linked OXTR Variants Are Associated with Social Behavior Differences in Bonobos (Pan paniscus)

Abstract

Single-nucleotide polymorphisms (SNPs) in forkhead box protein P2 (FOXP2), oxytocin receptor (OXTR), and arginine vasopressin receptor gene 1A (AVPR1A) have been associated with linguistic and social development in humans, as well as symptom severity in autism. Studying biobehavioral mechanisms in the species most closely related to humans can provide insights into the origins of human communication, and the impact of genetic variation on complex behavioral phenotypes. Here, we tested the hypothesis that similar genetic factors underlie social communication differences in both bonobos (Pan paniscus) and humans. We analyzed Sanger sequencing results to determine if bonobos exhibit individual variation at 10 loci across FOXP2, OXTR, and AVPR1A that have been implicated in human social development and behavior. We identified a novel variant in bonobo FOXP2, as well as three novel variants in bonobo OXTR that were 19-184 base pairs away from the target human SNPs. We also found a linked SNP combination (TGA) across the 3 novel bonobo OXTR sites at high frequency (65%) in the study population, including 6 homozygous bonobos. When comparing the combined OXTR genotypes, we found significant group differences in social behavior; bonobos with two copies of the TGA combination were more social than bonobos with one copy and bonobos with zero copies of the TGA combination. Taken together, our findings suggest that these OXTR variants may influence individual-level social behavior in bonobos and support the notion that linked genetic variants are promising biomarkers for differences in human social communication. Revision SummaryThe original manuscript version underwent peer-review at Frontiers in Behavioral Neuroscience. As a part of this process, a reviewer requested that the sequence files be included in the manuscript. While preparing these files, Dr. Hudson identified several errors in his work regarding the individual bonobo genotypes reported in the original version of the manuscript. Upon discovery of the errors, Dr. Skiba and Dr. Taglialatela conducted a new genetic analysis using the raw files and subsequently corrected the misreported information - updating the editorial team and including the raw sequences with the revised manuscript. In addition to requested edits for improvement and clarity by the peer-reviewers, this revised manuscript corrects several errors in the human and bonobo reference genomes, the SNP locations, and the individual genotypes reported in the original manuscript. Information in the figures, main text, and supplementary materials has been corrected in this revised version. Dr. Hudson and his lab member, Mr. Hansen, were unable to identify how the errors in data reporting occurred, and neither party contributed to the revised version of this manuscript. The co-author list has been adjusted to reflect contributions to the corrected analyses and revised manuscript. We are deeply grateful to the editorial team and reviewers at Frontiers in Behavioral Neuroscience for their thorough peer-review of this work - improving the overall quality of the manuscript and leading to the discovery and correction of substantial errors in the original version.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Skiba, S., Hansen, A., McCall, R., Byers, A., Waldron, S., Epping, A. J., Taglialatela, J. P., Hudson, M. L.. 2023-12-23. Linked OXTR Variants Are Associated with Social Behavior Differences in Bonobos (Pan paniscus). https://doi.org/10.1101/2023.12.22.573122

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

Geometry of antigenic evolution improves influenza vaccine selection

Anticipating antigenic evolution is essential for selecting effective seasonal influenza A/H3N2 vaccine strains. To this end, we integrated hemagglutination-inhibition and neutralization titers spanning 2002 to 2025 into a unified Bayesian antigenic map. The map resolves twelve antigenic clusters advancing in discrete steps, with several clusters co-circulating in most seasons. In 15 of 21 seasons, the WHO-recommended vaccine belonged to an earlier cluster than the dominant circulating cluster. The direction of each vaccine update relative to recent viral drift predicted vaccine effectiveness one season ahead in out-of-sample forecasts. Antigenic distance, the conventional measure of vaccine-virus match, was weakly associated with effectiveness until update direction was accounted for. Retrospectively ranking candidate strains by predicted effectiveness would have selected a strain predicted to outperform the WHO recommendation in every season, raising mean predicted effectiveness by 10 percentage points.

evolutionary biology↗

Evolutionary replay of duplicate-gene retention across independent whole-genome duplications

Whole-genome duplications repeatedly expose ancestral gene lineages to the same broad evolutionary outcome-retention or loss of duplicated copies-but it remains unclear whether this history replays similarly across evolutionary scales. We placed duplicate retention in shared hierarchical orthologous-group coordinates and compared percentile ranks defined within each event-wide mapped universe. Three independent angiosperm whole-genome duplications showed reproducible replay (global rank effect T-replay = 0.210, bootstrap 95% confidence interval 0.172-0.248; permutation P = 1/100,001). A plant reference-panel score specified before target outcomes were examined predicted retention after the Apple/Pear duplication ({rho} = 0.169, n = 373). Deep transfer was heterogeneous: the teleost-genome-duplication estimate was positive but unresolved ({rho} = 0.107, n = 151, 95% confidence interval -0.050 to 0.260), whereas transfer to the ancient budding-yeast whole-genome duplication (yeast WGD) was supported ({rho} = 0.280, n = 186). Independently reconstructed animal outcomes also replayed between teleost and Stylommatophora duplications (r = 0.226, n = 146, P = 0.00326), although the effect remained below a prespecified strong-effect threshold. A strict plant-animal comparison was limited to 25 deeply one-to-one lineages and was unresolved (r = 0.033, 95% confidence interval -0.303 to 0.340). Thus, ancestral gene-lineage identity contributes reproducibly to duplicate retention after independent whole-genome duplications, but replay is structured by evolutionary lineage and modified by event-specific history rather than governed by one universal gene-fate ranking.

evolutionary biology↗

A Hymenoptera-restricted gene mediating ant castes co-opts deeply conserved machinery to control organ size

Lineage-specific genes are widespread and have been implicated as phenotypic innovation inducers, but how they acquire complex developmental functions remains poorly understood. Ant queens and workers develop dramatically different organ sizes from identical genomes under juvenile hormone (JH) control, yet the molecular effectors translating JH signalling into caste-specific organ growth remain unknown. Here we identify torch, a Hymenoptera-restricted gene, as the most consistently gyne-biased and JH-responsive gene across 68 ant species. Knockdown of torch in virgin queens of Monomorium pharaonis produces a worker-like, multi-organ growth-restricted phenotype. Mechanistically, torch harbours an E-box-like motif activated by the JH receptor Gce-Tai and acts as a GA-repeat-binding transcription factor that regulates Hippo signalling, the deeply conserved organ-size control pathway in animals. Expressing torch heterologously in mice and a growth-restricted Drosophila background shows that the gene retained its general growth-promoting activity across more than 700 million years of animal evolution in lineages that lack the gene, establishing that its function is mediated through conserved rather than ant-specific machinery. A lineage-specific gene can therefore acquire complex morphogenetic function by co-opting ancient organ-size circuitry, providing a general route by which novel genes can drive phenotypic innovation.

evolutionary biology↗