Deep learning models to map osteocyte networks can successfully distinguish between young and aged bone

Dreyer Vetter, S.; Schurman, C. A.; Alliston, T.; Slabaugh, G.; Verbruggen, S. W.

doi:10.1101/2023.12.20.572567

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bioRxiv · 10.1101/2023.12.20.572567

Deep learning models to map osteocyte networks can successfully distinguish between young and aged bone

Dreyer Vetter, S.·Schurman, C. A.·Alliston, T.·Slabaugh, G.·Verbruggen, S. W.

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Abstract

Osteocytes, the most abundant and mechanosensitive cells in bone tissue, play a pivotal role in bone homeostasis and mechano-responsiveness, orchestrating the intricate balance between bone formation and resorption under daily activity. Studying osteocyte connectivity and understanding their intricate arrangement within the lacunar canalicular network (LCN) is essential for unraveling bone physiology. This is particularly true as our bones age, which is associated with decreased integrity of the osteocyte network, disrupted mass transport, and lower sensitivity to the mechanical stimuli that allow the skeleton to adapt to changing demands. Much work has been carried out to investigate this relationship, often involving high resolution microscopy of discrete fragments of this network, alongside advanced computational modelling of individual cells. However, traditional methods of segmenting and measuring osteocyte connectomics are time-consuming and labour-intensive, often hindered by human subjectivity and limited throughput. In this study, we explore the application of deep learning and computer vision techniques to automate the segmentation and measurement of osteocyte connectomics, enabling more efficient and accurate analysis. We compare several state-of-the-art computer vision models (U-Nets and Vision Transformers) to successfully segment the LCN, finding that an Attention U-Net model can accurately segment and measure 81.8% of osteocytes and 42.1% of dendritic processes, when compared to manual labelling. While further development is required, we demonstrate that this degree of accuracy is already sufficient to distinguish between bones of young (2 month old) and aged (36 month old) mice, as well as capturing the degeneration induced by genetic modification of osteocytes. By harnessing the power of these advanced technologies, further developments can unravel the complexities of osteocyte networks in unprecedented detail, revolutionising our understanding of bone health and disease.

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Dreyer Vetter, S., Schurman, C. A., Alliston, T., Slabaugh, G., Verbruggen, S. W.. 2023-12-21. Deep learning models to map osteocyte networks can successfully distinguish between young and aged bone. https://doi.org/10.1101/2023.12.20.572567

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