bioRxiv Science⌕ Search

bioRxiv · 10.1101/2023.11.25.568691

Exploring connectivity of resting-state EEG between BCI-literate and -illiterate groups

Abstract

Although Motor Imagery-based Brain-Computer Interface (MI-BCI) holds significant potential, its practical application faces challenges attributable to the phenomenon known as BCI-illiteracy. BCI researchers have attempted to predict BCI-illiteracy to mitigate this issue. As connectivitys significance in neuroscience has grown, BCI researchers have applied connectivity to predict BCI-illiteracy with resting-state data. However, connectivity metrics use and interpretation of the results can be challenging for several reasons. Firstly, there are various connectivity metrics, each with its own advantages and disadvantages based on their underlying hypotheses and perspectives. These pros and cons are shaped by several factors, increasing the complexity of their application and interpretation. Secondly, it is unclear whether they are as acceptable as their developers have claimed. Thirdly, it is not evident which factor may influence the estimation of connectivity and which metric is suitable for this research. Therefore, this study conducted an empirical test to provide BCI researchers with a better understanding of connectivity. We analyzed three large public datasets using three functional connectivity (FC) and three effective connectivity (EC) metrics. Additionally, the structural difference in the resting-state network between BCI-literate and illiterate groups was examined. Our analysis revealed that the appropriate frequency range to measure connectivity varies depending upon the metric used. The alpha range was found to be suitable for FC, while the alpha, alpha + theta, and beta ranges were found to be appropriate for EC. Further, the results of estimating connectivity varied depending upon the dataset and metric used. Although we observed that BCI-literacy had stronger connections between nodes, no other significant structural differences were found between the two groups. However, BCI-literacys resting-state network displayed higher network efficiency compared to BCI-illiteracy, regardless of the metrics and dataset used. Therefore, it seems reasonable to use resting-state connectivity to predict BCI-illiteracy. Our conclusion is that each metric has its own specific hypothesis and perspective to measure connectivity under certain conditions.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Park, H., Jun, S. C.. 2023-11-27. Exploring connectivity of resting-state EEG between BCI-literate and -illiterate groups. https://doi.org/10.1101/2023.11.25.568691

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

The Unreasonable Effectiveness of Cell Types in Describing Neuronal Physiological Features

Single-cell RNA sequencing (scRNA-seq) captures detailed gene expression profiles at scale, while patch-clamp recordings measure intrinsic neuronal electrophysiological properties. Modeling the relations between these two modalities remains a challenge. Here, we compare how well electrophysiological features can be predicted by traditional transcriptomic cell type classification, representations derived from a foundational model (scGPT) pretrained on large-scale scRNA-seq datasets, ion channel-coding genes, and highly variable genes. Using paired transcriptomic and electrophysiological patch-sequencing data from 495 human neurons from neurosurgical tissue, we find that cluster-level cell type representations consistently outperform highly variable gene selection, ion channel gene selection, and context-enriched scGPT embeddings. Notably, performance varies across model architectures and initializations, and the best results are obtained by combining the outputs of separate cell type and scGPT-based models. Together, these findings suggest that traditional discrete cellular classification is highly effective in predicting physiological features. For maximum performance it can be complemented by pretrained transformer models.

neuroscience↗

A nonlinear inhibition pathway underlying cortical responses to tuned holographic optogenetic perturbations

Optogenetics enables causal manipulation of cortical activity. Perturbation responses can be counterintuitive due to network interactions, making theory essential for predicting them. Existing approaches often rely on linear approximations, which fail for many biologically relevant perturbations. Here we develop a nonlinear theory of responses to holographic perturbations in cell-type-specific recurrent networks with structured connectivity. We fit a nonlinear model to mouse V1 data, which shows cotuned-ensemble suppression: perturbing spatially clustered neurons with similar preferred orientations yields markedly stronger short-range suppression than perturbing untuned ensembles. We show that cotuned-ensemble suppression arises from a feature-tuned, nonlinear inhibition pathway implicating somatostatin-positive (SST) interneurons. The theory predicts that cotuned ensembles suppress parvalbumin-positive (PV) neurons but facilitate SST neurons, and links the degree of cotuned-ensemble suppression or facilitation to the variance of the SST response. This framework identifies mechanisms by which nonlinear inhibition sculpts cortical dynamics and establishes a predictive basis for targeted optogenetic interventions.

neuroscience↗

Proteomic signatures of APOE ε4 across human tissues and cell types in Alzheimers disease

The apolipoprotein E {varepsilon}4 (APOE {varepsilon}4) allele is the strongest genetic risk factor for late-onset Alzheimers disease (AD). However, the underlying molecular mechanisms remain unclear. This study included 1691 participants from the Religious Orders Study and Rush Memory and Aging Project (ROSMAP), 1226 participants from the Accelerating Medicines Partnership - Alzheimers Disease (AMP-AD) Diverse Cohorts Study, and 735 participants from the Alzheimers Disease Neuroimaging Initiative (ADNI). To characterise APOE {varepsilon}4 molecular effects, we analysed proteomic data from plasma, cerebrospinal fluid (CSF), and induced pluripotent stem cell (iPSC)-derived astrocytes and neurons, as well as transcriptomic and proteomic data from multiple brain regions. The association of APOE {varepsilon}4 with AD neuropathology was also examined. APOE {varepsilon}4 carriers shared a plasma proteomic signature enriched for immune processes, irrespective of AD diagnosis. A machine learning classifier trained on this signature discriminated APOE {varepsilon}4 carriers from non-carriers in an independent cohort using CSF proteomics. APOE {varepsilon}4 carriage was associated with higher Braak stages and Consortium to Establish a Registry for Alzheimers Disease (CERAD) score. However, only limited APOE {varepsilon}4-associated transcriptomic and proteomic changes were observed in bulk brain tissue, with poor cross-layer concordance. Proteomic analyses of iPSC-derived astrocytes and neurons further revealed cell-type-specific APOE {varepsilon}4-associated changes. APOE {varepsilon}4 is associated with a consistent proteomic signature across plasma and CSF. Its molecular effects in the brain differ across cell types, brain regions and molecular layers. These findings support the need for cell-type-resolved multi-omic studies to elucidate how APOE {varepsilon}4 confers AD risk.

neuroscience↗