Towards modeling genome-scale knowledge in the global ocean

Regimbeau, A.; Aumont, O.; Bowler, C.; Guidi, L.; Jackson, G. A.; Karsenti, E.; Memery, L.; Tagliabue, A.; Eveillard, D.

doi:10.1101/2023.11.23.568447

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bioRxiv · 10.1101/2023.11.23.568447

Towards modeling genome-scale knowledge in the global ocean

Regimbeau, A.·Aumont, O.·Bowler, C.·Guidi, L.·Jackson, G. A.·Karsenti, E.·Memery, L.·Tagliabue, A.·Eveillard, D.

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Abstract

Earth System Models (ESMs) highly simplify their representation of biological processes, leading to major uncertainty in climate change impacts. Despite a growing understanding of molecular networks from genomic data, describing how changing phytoplankton physiology affects the production of key metabolites remains elusive. Here we embed a genome-scale model within a state-of-the-art ESM to deliver an integrated understanding of how gradients of nutritional constraints modulate metabolic reactions and molecular physiology. Applied to the prevalent marine cyanobacteria Prochlorococcus, we find that glycogen and lipid storage can be understood as a consequence of acclimation to environmental gradients. Given the pressing need to assess how biological diversity influences biogeochemical functions, genome-enabled ESMs allow the quantification of the contribution of modeled organisms to the production of dissolved organic carbon and its molecular composition.

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Regimbeau, A., Aumont, O., Bowler, C., Guidi, L., Jackson, G. A., Karsenti, E., Memery, L., Tagliabue, A., Eveillard, D.. 2023-11-23. Towards modeling genome-scale knowledge in the global ocean. https://doi.org/10.1101/2023.11.23.568447

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