bioRxiv Science⌕ Search

bioRxiv · 10.1101/2023.11.04.565625

Analyzing asymmetry in brain hierarchies with a linear state-space model of resting-state fMRI data

Abstract

The study of functional brain connectivity in resting-state functional magnetic resonance imaging (rsfMRI) data has traditionally focused on zero-lag statistics. However, recent research has emphasized the need to account for dynamic aspects due to the complex patterns of time-varying co-activations among brain regions. In this regard, the importance of non-zero-lag statistics in studying complex brain interactions has been emphasized, both in terms of modeling and data analysis. Here, we show how a time-lag description is incorporated within the framework of dynamic causal modeling (DCM) resulting in an asymmetric state interaction matrix known as effective connectivity (EC). Asymmetry in EC is conventionally associated with the directionality of interactions between brain regions and is frequently employed to distinguish between incoming and outgoing node connections. We will revisit this interpretation by employing a decomposition of the EC matrix. This decomposition enables us to isolate the steady-state differential crosscovariance matrix, which is responsible for modeling the information flow and introducing time irreversibility. In other words, by modeling the off-diagonal part of the differential covariance, the system landscape may exhibit a curl steady-state flow component that breaks detailed balance and diverges the dynamics from equilibrium. Our empirical results reveal that only the outgoing strengths of the EC matrix relate with the flow described by the differential cross-covariance, while the so-called incoming strengths are primarily driven by the zero-lag covariance, specifically the precision matrix, thus reflecting conditional independence rather than directionality.

Source connections

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Benozzo, D., Baggio, G., Baron, G., Chiuso, A., Zampieri, S., Bertoldo, A.. 2023-11-05. Analyzing asymmetry in brain hierarchies with a linear state-space model of resting-state fMRI data. https://doi.org/10.1101/2023.11.04.565625

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

Rab10 and Arhgef7 interact to promote axon extension by linking vesicle supply and exocytosis

The formation of functional neural circuits begins with the extension of a single axon by immature neurons. Axon elongation requires an expansion of the plasma membrane that depends on the polarization of vesicle trafficking and exocytosis. It is not completely understood how the increased transport of vesicles into the growing axon is linked to their subsequent insertion into the plasma membrane. An analysis of early stages of neuronal differentiation indicates that an asymmetry in neurite length precedes axon specification and the accumulation of PPVs in the nascent axon. We show that increasing the transport of vesicles in unpolarized neurons is sufficient to promote the extension of additional axons. This effect indicates that an increased supply of vesicles stimulates their subsequent insertion into the membrane to allow neurite growth. The link between vesicle transport and exocytosis is mediated by the interaction of Rab10 with Arhgef7. Rab10 stimulates Arhgef7 activity on PPVs as a GEF for Cdc42b to promote axon extension through exocyst-dependent exocytosis, suggesting that their interaction links the increased supply of PPVs to their exocytosis.

neuroscience↗

Subcellular Spatial Profiling Unveils Links Between Neuritic Plaques with Selective Tau Vulnerability in Alzheimer's Disease

Alzheimer's disease (AD) features widespread extracellular amyloid-{beta} plaques but selective intraneuronal tau accumulation in cortical layers II/III and V, while layer IV remains relatively resistant. Here, we combined subcellular spatial transcriptomics with co-registered A{beta} and pTau immunohistochemistry to determine why neurons exposed to comparable plaque-associated pathology differ in somatic pTau accumulation. Plaque-associated neuritic stress occurred similarly across layers, but layer IV neurons showed attenuated pTau accumulation and reduced somatic expression of a shared neurite-soma stress program involving DCTN1, CALM3, NORAD, and PIN1. Trajectory analysis within layers identified tau-vulnerable and resistant neuronal states implicating calcium signaling, retrograde transport, and lysosomal function. Notably, astrocytic APOE-neuronal LRP1 co-expression increased significantly along the pTau-vulnerable trajectory, and APOE {epsilon}4 was associated with stronger coupling of local plaque pathology to pTau-associated molecular programs. These findings reveal neuronal programs and neuron-glia interactions underlying selective tau vulnerability and resistance in AD, highlighting potential tau-targeting therapeutics.

neuroscience↗

Widespread oscillatory suppression in autism persists in the absence of psychotropic medication.

Purpose: Investigate the neural oscillatory activity associated with autism spectrum disorder (ASD) using electroencephalographic (EEG) recordings in children and adolescents. Compare the corresponding oscillatory power between ASD patients taking psychotropic medication with a drug-naive group. Methods: ASD diagnosis was done using DSM-IV and CARS (Childhood Autism Rating Scale). EEG recordings employed 22 scalp electrodes (10/20 system). ASD vs. neurotypical groups were matched for sex and age (5 females; average age: ~10 years old). We analyzed the resting state (eyes open) EEG power spectrum during ~2-minute recordings. The multitaper FFT method was used to estimate spectral power for the delta, theta, alpha, beta and gamma frequency bands. We pooled together data from several electrodes to compute comprehensive power spectra and assess the oscillatory behavior of macro brain regions. Results: We observed widespread (~4Hz - 20Hz) oscillatory suppression comprising the theta, alpha and beta frequency bands. The most widespread and robust ASD-associated power suppression was in the high theta and alpha bands. Delta and gamma bands showed no significant power change for any of the brain regions studied. Results from a subgroup of patients (N = 9) who never used psychotropics confirmed these findings, indicating that they are not an artifact of medication. Conclusion: Suppression in theta, alpha and beta oscillations may offer insights into the neurophysiological underpinnings of autism and could be used as an accessible and comprehensive tool in ASD diagnosis, regardless of the patients being or not on medication.

neuroscience↗