Generation of human induced pluripotent stem cell (hiPSC) lines from patients with extreme high and low polygenic scores for QT interval

Mitchell, D.; Ullah, R.; Vanags, L.; Shen, A.; Jones, L.; ONeill, M.; Davogustto, G.; Shaffer, C.; Roden, D.; Shoemaker, B.; Williams, H.; Strickland, T.; Agee, T.; Johnson, C.; Kroncke, B.

doi:10.1101/2023.11.03.565486

bioRxiv · 10.1101/2023.11.03.565486

Generation of human induced pluripotent stem cell (hiPSC) lines from patients with extreme high and low polygenic scores for QT interval

Mitchell, D.·Ullah, R.·Vanags, L.·Shen, A.·Jones, L.·ONeill, M.·Davogustto, G.·Shaffer, C.·Roden, D.·Shoemaker, B.·Williams, H.·Strickland, T.·Agee, T.·Johnson, C.·Kroncke, B.

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Abstract

Long QT syndrome (LQTS) is an inherited cardiac arrhythmia syndrome with congenital and drug-induced presentations and known monogenic and polygenic contributions. LQTS represents a significant clinical challenge due to its complex genetic underpinning and propensity for fatal arrhythmias. In this study, we generated induced pluripotent stem cells (iPSCs) reprogrammed from peripheral blood mononuclear cells (PBMCs) of six patients with extreme polygenic scores for short and long corrected QT intervals. iPSC lines were rigorously validated for genomic integrity through karyotyping and targeted mutation analysis specific to a lengthened or shortened QT interval. Pluripotency was confirmed by expression of key markers TRA 1-60, TRA 1-81, SOX2, OCT4, NANOG, and REX1 via quantitative PCR and immunofluorescence. Subsequent cardiac induction successfully generated cardiomyocytes that were further characterized. This patient-specific approach will enable us to better understand variable expressivity and penetrance of LQTS. Rigorously validated iPSC lines serve as a vital resource for elucidating the molecular mechanisms underlying LQTS. Our study provides a robust and clinically relevant resource to facilitate our understanding the genetic and cellular complexity of LQTS.

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Mitchell, D., Ullah, R., Vanags, L., Shen, A., Jones, L., ONeill, M., Davogustto, G., Shaffer, C., Roden, D., Shoemaker, B., Williams, H., Strickland, T., Agee, T., Johnson, C., Kroncke, B.. 2023-11-08. Generation of human induced pluripotent stem cell (hiPSC) lines from patients with extreme high and low polygenic scores for QT interval. https://doi.org/10.1101/2023.11.03.565486

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