Structural and quantum chemical basis for OCP-mediated quenching of phycobilisomes

Sauer, P. V.; Cupellini, L.; Sutter, M.; Bondanza, M.; Dominguez Martin, M. A.; Kirst, H.; Bina, D.; Koh, A. F.; Kotecha, A.; Greber, B. J.; Nogales, E.; Polivka, T.; Mennucci, B.; Kerfeld, C. A.

doi:10.1101/2023.09.30.560311

bioRxiv · 10.1101/2023.09.30.560311

Structural and quantum chemical basis for OCP-mediated quenching of phycobilisomes

Sauer, P. V.·Cupellini, L.·Sutter, M.·Bondanza, M.·Dominguez Martin, M. A.·Kirst, H.·Bina, D.·Koh, A. F.·Kotecha, A.·Greber, B. J.·Nogales, E.·Polivka, T.·Mennucci, B.·Kerfeld, C. A.

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Abstract

Cyanobacteria employ large antenna complexes called phycobilisomes (PBS) for light harvesting. However, intense light triggers non-photochemical quenching, where the Orange Carotenoid Protein (OCP) binds to PBS, dissipating excess energy as heat. The mechanism of efficiently transferring energy from phycocyanobilins in PBS to canthaxanthin in OCP remains insufficiently understood. Using advanced cryogenic-electron microscopy, we unveiled the OCP-PBS complex structure at 1.6-2.1 [A] resolution, showcasing its inherent flexibility. Employing multiscale quantum chemistry, we disclosed the quenching mechanism. Identifying key protein residues, we clarified how canthaxanthins transition dipole moment in its lowest-energy dark state becomes large enough for efficient energy transfer from phycocyanobilins. Our energy transfer model offers a detailed understanding of the atomic determinants of light harvesting regulation and antenna architecture in cyanobacteria. One sentence summaryHigh-resolution cryo-EM structure of the OCP-PBS complex reveals intrinsic motions and enables the atomic simulation of the quenching mechanism

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Sauer, P. V., Cupellini, L., Sutter, M., Bondanza, M., Dominguez Martin, M. A., Kirst, H., Bina, D., Koh, A. F., Kotecha, A., Greber, B. J., Nogales, E., Polivka, T., Mennucci, B., Kerfeld, C. A.. 2023-09-30. Structural and quantum chemical basis for OCP-mediated quenching of phycobilisomes. https://doi.org/10.1101/2023.09.30.560311

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