bioRxiv Science⌕ Search

bioRxiv · 10.1101/2023.08.18.553714

Radical differences between two FLIM microscopes affect interpretation of cell signaling dynamics

Abstract

Emerging evidence suggests that cell signaling outcomes depend not only on the signal strength but also on its temporal progression. Our lab employs Fluorescence Lifetime Imaging of Resonance Energy Transfer (FLIM/FRET) biosensors to study intracellular signaling dynamics. We studied activation of {beta}1 receptors by Isoproterenol, which triggers cAMP signaling via the G protein Gs, using two different FLIM microscopes: a widefield frequency domain FLIM (fdFLIM) setup and a fast confocal Time Correlated Single Photon Counting (TCSPC) setup. When comparing results from each FLIM setup, unexpectedly we obtained distinctively different cAMP kinetics: fdFLIM recording of cAMP in HeLa and Cos7 cells yielded transient responses, reminiscent of rapid receptor desensitization, while TCSPC recordings exhibited sustained responses lasting over 30 minutes. We initially suspected phototoxicity due to the intense light locally in the laser focus spot in confocal microscopy to interfere with normal termination of signal transduction and set out to map photosensitive steps in the signaling cascade in detail. We find no evidence for light-sensitivity in either generation or breakdown of cAMP, but rather, our findings show that the kinetic differences are due to selective degradation of {beta}1 agonists on the fdFLIM setup. Agonist degradation appeared due to the commercial FluoroBrite medium, even though this has been specifically advertised to lower phototoxicity and reduce autofluorescence. Mass spectrometry identified Folic acid, an undisclosed constituent of FluoroBrite, as the culprit leading to artifacts in fdFLIM measurements. In all, our study underscores the impact of subtle phototoxicity effects on experimental outcome, and it shows that in this case confocal TCSPC provides the more reliable data needed to study response kinetics. This work also emphasizes the it is crucial that scientific vendors fully disclose chemical formulations.

Source connections

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Mukherjee, S., Klarenbeek, J., El Oualid, F., van den Broek, B., Jalink, K.. 2023-08-19. Radical differences between two FLIM microscopes affect interpretation of cell signaling dynamics. https://doi.org/10.1101/2023.08.18.553714

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

Functional characterization of Rho GTPase activating proteins SYDE1 and SYDE2

The human genome encodes more than 60 proteins containing Rho GTPase activating protein (RhoGAP) domains, many of which remain understudied with respect to their target specificity and biological roles. SYDE1 and SYDE2 are two such orphan RhoGAPs, for which there are few studies characterizing their biochemical and cellular functions and conflicting reports identifying their cognate GTPases. We previously identified SYDE1 and SYDE2 in a screen for substrates of the c-Jun N-terminal kinases. Here, we show that SYDE1 and SYDE2 are preferentially phosphorylated by JNK1 relative to other mitogen-activated protein kinases (MAPKs) at sites proximal to a kinase docking region. Purified SYDE1 and SYDE2 are shown to have significant catalytic GAP activity toward RhoA, Rac1, and Cdc42. However, neither up- nor down-regulation of SYDE1/2 expression leads to detectable changes in bulk GTP loading of any of these GTPases. Nevertheless, we demonstrate that SYDE1 and SYDE2, in a partially GAP-dependent manner, increase cell spreading and number of focal adhesions, and promote more directionally persistent migration in HEK293 cells. Together, these findings establish SYDE1 and SYDE2 as robust JNK substrates with catalytic activity toward a set of Rho GTPases and reveal basic functions of SYDE1 and SYDE2 in regulating cell morphology, adhesion, and migration.

cell biology↗

The filopodial scaffold polyphosphate dictates cell adhesion-versus-invasion decisions

Inorganic polyphosphate (polyP) is an ancient polymer conserved across all life, serving cell type and location specific functions in every major compartment. Yet its role at the plasma membrane, where it accumulates to peak levels in many primary cells, is largely unknown. Here we identify polyP as a stabilizing component of filopodia, actin based membrane protrusions that govern cell adhesion, contact inhibition, and chemotaxis. Elevating cellular polyP increases filopodial stability and enhances cell adhesion, whereas reducing polyP accelerates filopodial disassembly and promotes cell migration. Mechanistically, we find that polyP acts as a structural filopodial scaffold, recruiting and organizing IRSp53, a membrane curvature inducing protein. We show that metastatic fibroblasts and breast cancer organoids carry markedly reduced and intracellularly reorganized polyP levels relative to their non transformed counterparts. Restoring endogenous polyP via lipid nanoparticle delivery suppresses their invasive phenotypes and reverses prometastatic gene expression signatures, implicating polyP as a primordial tumor suppressor.

cell biology↗

Mitochondrial transfer mediates metabolic communication between beta cells and islet macrophages

Pancreatic islet macrophages support islet homeostasis and adapt their metabolic program in response to environmental cues, including beta cell released factors. Intercellular mitochondrial transfer is a biological process that modulates cellular responses. To test whether beta cells, which are strongly secretory, transfer mitochondria to islet macrophages, we generated mice with beta cell-specific expression of mitochondrial GFP (PhAMfloxIns1Cre). We demonstrate that beta cells transfer mitochondria to islet macrophages in vivo and in vitro. Diabetogenic stressors did not alter the frequency of mitochondrial transfer and macrophages containing beta cell-derived GFP exhibit increased protein synthesis rates. RNA-seq identified upregulation of activity-regulated cytoskeleton associated protein (Arc) in macrophages receiving beta cell-derived mitochondria, while disruption of actin cytoskeleton dynamics prevented mitochondrial transfer. Together, these findings identify mitochondrial transfer as a previously unrecognized mechanism of beta cell-macrophage communication that may contribute to islet homeostasis and immune regulation.

cell biology↗