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bioRxiv · 10.1101/2023.05.25.542256

splicekit: a comprehensive toolkit for splicing analysis from short-read RNA-seq

Rot, G.·Wehling, A.·Schmucki, R.·Berntenis, N.·Zhang, J. D.·Ebeling, M.
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Abstract

MotivationAnalysis of alternative splicing using short-read RNA-seq data is a complex process that involves several steps: alignment of reads to the reference genome, identification of alternatively spliced features, motif discovery, analysis of RNA-protein binding near donor and acceptor splice sites, and exploratory data visualization. ResultsWe introduce splicekit, a python package that provides a comprehensive set of tools for conducting splicing analysis. Availability and implementationhttps://github.com/bedapub/splicekit and over PyPI.

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Rot, G., Wehling, A., Schmucki, R., Berntenis, N., Zhang, J. D., Ebeling, M.. 2023-05-26. splicekit: a comprehensive toolkit for splicing analysis from short-read RNA-seq. https://doi.org/10.1101/2023.05.25.542256

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