Convergence of multiple RNA-silencing pathways on GW182/TNRC6

Welte, T.; Goulois, A.; Stadler, M. B.; Hess, D.; Soneson, C.; Neagu, A.; Azzi, C.; Lübke, M. J.; Seebacher, J.; Schmidt, I.; Estoppey, D.; Nigsch, F.; Reece-Hoyes, J.; Hoepfner, D.; Grosshans, H.

doi:10.1101/2023.04.20.537632

bioRxiv · 10.1101/2023.04.20.537632

Convergence of multiple RNA-silencing pathways on GW182/TNRC6

Welte, T.·Goulois, A.·Stadler, M. B.·Hess, D.·Soneson, C.·Neagu, A.·Azzi, C.·Lübke, M. J.·Seebacher, J.·Schmidt, I.·Estoppey, D.·Nigsch, F.·Reece-Hoyes, J.·Hoepfner, D.·Grosshans, H.

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Abstract

The RNA-binding protein TRIM71/LIN-41 is a phylogenetically conserved developmental regulator that functions in mammalian stem cell reprogramming, brain development and cancer. TRIM71 recognizes target mRNAs through hairpin motifs and silences them through molecular mechanisms that await identification. Here, we uncover that TRIM71 silences its targets by recruiting TNRC6/GW182, a core component of the miRNA-induced silencing complex (miRISC). Co-immunoprecipitation reveals interaction of TNRC6A with additional RNA-binding proteins and we demonstrate that AGO2, TRIM71, and UPF1 each recruit TNRC6 to specific, largely distinct sets of transcripts to silence them. As cellular TNRC6 levels are limiting, competition occurs among the silencing pathways, such that loss of AGO2 protein, or of AGO2 binding to TNRC6, enhances the activities of the other pathways. We conclude that a miRNA-like silencing activity is shared among different mRNA silencing pathways and that use of TNRC6 as a central hub provides a means to integrate their activities.

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Welte, T., Goulois, A., Stadler, M. B., Hess, D., Soneson, C., Neagu, A., Azzi, C., Lübke, M. J., Seebacher, J., Schmidt, I., Estoppey, D., Nigsch, F., Reece-Hoyes, J., Hoepfner, D., Grosshans, H.. 2023-04-20. Convergence of multiple RNA-silencing pathways on GW182/TNRC6. https://doi.org/10.1101/2023.04.20.537632

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