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bioRxiv · 10.1101/2023.04.12.536544

Fission yeast obeys a linear size law under nutrient titration

Bertaux, F.·Kleijn, I. T.·Marguerat, S.·Shahrezaei, V.
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Abstract

Steady-state cell size and geometry depend on growth conditions. Here, we use an experimental setup based on continuous culture and single-cell imaging to study how cell volume, length, width and surface-to-volume ratio vary across a range of growth conditions including nitrogen and carbon titration, the choice of nitrogen source, and translation inhibition. Overall, we find cell geometry is not fully determined by growth rate and depends on the specific mode of growth rate modulation. However, under nitrogen and carbon titrations, we observe that the cell volume and the growth rate follow the same linear scaling. O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=199 SRC="FIGDIR/small/536544v1_fig1.gif" ALT="Figure 1"> View larger version (49K): org.highwire.dtl.DTLVardef@1d5c614org.highwire.dtl.DTLVardef@1bf877corg.highwire.dtl.DTLVardef@157f140org.highwire.dtl.DTLVardef@9fc243_HPS_FORMAT_FIGEXP M_FIG O_FLOATNOFigureC_FLOATNO A. Graphical outline of the growth and imaging assays. B. Illustration of the procedure used to extract cell size and geometry data. C. Average surface-to-volume (S/V) ratio plotted as a function of average cell width across all steady-state cultures. The dark grey circle indicates the base growth medium, EMM2. Cultures limited in their growth by the concentration of ammonium, glucose, and cycloheximide in the medium are indicated with cyan lozenges, green triangles, and orange squares, respectively. Cultures limited by the choice of nitrogen source are indicated with light grey circles; the amino-acid nitrogen source used is labelled with its three-letter abbreviation, using Amm for the equivalent culture grown with ammonium chloride as its sole nitrogen source. D. Average cell volume plotted against the growth rate across all cultures, showing collapse for ammonium- and glucose-limited cultures and differing behaviour for nitrogen-source- and translation-limited cultures. Plotted in dark grey is a linear fit to the ammonium- and glucose-limited data, including the base medium, with 95% confidence interval; a similar fit (without CI) to the cycloheximide-limited cultures is indicated by a dashed orange line. E. Average surface-to-volume (S/V) ratio against growth rate across all cultures, with dashed lines for ammonium-, glucose-, and translation-limited cultures representing linear fits to the respective data, each including the base medium. Under ammonium limitation, the surface-to-volume ratio increases markedly as the growth rate decreases. A moderate increase is observed for glucose limitation and a moderate decrease is observed for protein synthesis inhibition with cycloheximide. There is no consistent trend with the growth rate when the quality of the nitrogen source is varied. F. Average surface area, G. cell length, H. cell width against growth rate, showing that ammonium-limited cells are thinner than glucose-limited cells at equivalent growth rates, consistent with their different surface-to-volume ratios and the relation between surface-to-volume ratio and cell width (see C). C_FIG

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Bertaux, F., Kleijn, I. T., Marguerat, S., Shahrezaei, V.. 2023-04-13. Fission yeast obeys a linear size law under nutrient titration. https://doi.org/10.1101/2023.04.12.536544

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