bioRxiv Science⌕ Search

bioRxiv · 10.1101/2023.02.28.530416

The Giant Clam Photosymbiosis is a Physically Optimal Photoconversion System for the Most Intense Sunlight on Earth

Abstract

Giant clams are photosymbiotic with unicellular algae ("zooxanthellae") organized in the clams mantle tissue. This tissue has an especially low albedo for a photosynthetic system, generally less than 10% at all visible wavelengths. This efficient absorbance of light occurs in the ecological context of the high solar irradiances in intertidal habitats near the equator. At these light levels, photosynthetic systems typically adapt to absorb less light in order to prevent radiative damage to chloroplasts. Giant clams are therefore unusual. If the giant clam photosymbiosis proves to be simultaneously efficient at absorption and at phototransduction at these irradiances, they are potentially remarkably productive and an important source of bioinspiration. We showed previously that the clams organize algae into vertical pillars in the mantle tissue. The clams iridocytes, or optically structured skin cells on the surface of the tissue, then function to evenly distribute incoming solar irradiance along the vertical faces of the pillars. The result is that zooxanthellae in the system absorb solar power at lower rates than that of incoming solar flux. The overall energetic performance of this phtooconversion scheme has, however, been difficult to characterize given the complex three-dimensional structure and the fact that it is coupled to a much more voluminous, respiring animal. Here we use a combination of photochemical characterization and new quantitative modeling of data from the literature to estimate the photochemical efficiency as a function of incoming irradiance of the initial electron-transfer events. Our approach is to consider the clam mantle tissue in isolation as a meta-material for photoconversion. To do this, we developed a method to directly measure the systems photochemical efficiency with spatial resolution of 10s of microns using optical microprobes threaded through the tissue. These experimental efficiency data then serve as ground-truthing for a subsequent reanalysis of photosynthesis-irradiance curves of clams taken from the literature. For this quantitative re-analysis, we incorporated the clam systems quantum efficiency as a function of irradiance per cell into a Monte Carlo model of radiative transfer among cells to find the tissues area-specific oxygen evolution apart from any sinks. We found that cells located within the dense clam system had fluorescence transients (i.e., Kautsky curves 1), a direct measure of the efficiency of PS II) that were very slow and of low intensity, particularly for a dense system, consistent with photochemical efficiencies generally greater than 50% and often greater than 90%. When incorporated into a larger computational model, we found that mature Tridacnid clams can efficiently perform photoconversion of light energy into chemical energy at light intensities many times more intense than the maximum time-averaged environmental radiance, or even the solar constant. The intensities to which the clam is adapted, however, can be found in strong wave-lensed pulses of irradiance that are characteristic of the clams habitats. This surprising result makes sense if the system has evolved to both avoid damage from and utilize the power in the intense pulses of light that result from wave-lensing. Our model predicts that by evolving to compensate for the intense pulses of solar energy produced by wave-lensing, the clam system can perform photochemical conversion of radiation at intensities many times greater than the solar constant at around 90% quantum efficiency. This result in turn suggest a strategy for engineered organic and biological composite materials performing photoconversion under solar concentration. Graphical Abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=108 SRC="FIGDIR/small/530416v1_ufig1.gif" ALT="Figure 1"> View larger version (43K): org.highwire.dtl.DTLVardef@52764borg.highwire.dtl.DTLVardef@1d453d6org.highwire.dtl.DTLVardef@cc461dorg.highwire.dtl.DTLVardef@10f32f2_HPS_FORMAT_FIGEXP M_FIG C_FIG

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Holt, A. L., Rehm, L., Sweeney, A. M.. 2023-03-01. The Giant Clam Photosymbiosis is a Physically Optimal Photoconversion System for the Most Intense Sunlight on Earth. https://doi.org/10.1101/2023.02.28.530416

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

Mechanism of molecular recognition revealed through dynamic drug binding pathways to SARS-CoV-2 main protease

Characterization of drug-binding pathways remains experimentally limited by transient intermediates and computationally challenging due to long timescales intractable for conventional molecular dynamics. To address these challenges, we combined solution NMR titrations with weighted ensemble (WE) enhanced sampling simulations to resolve atomistic pathways of nirmatrelvir binding to the SARS-CoV-2 main protease. NMR titration revealed residue-dependent heterogeneity spanning fast, intermediate, and slow exchange regimes. WE simulations complement the NMR by providing insights into unassigned residues and adding time-resolved and three-dimensional structural context. We map key interactions along two distinct binding pathways, provide dynamic explanations for residues involved in resistance, and capture unique backbone conformations compared to those sampled in unbound or bound states. Our comprehensive binding model is consistent with a combined conformational selection and induced fit mechanism in which early transient contacts are made with residues E47 and L50 and allosteric motions are centered around residue V204 of the distal domain. This synergistic application of WE and titration NMR enables a more comprehensive characterization of drug binding than either method alone, providing an integrated framework that may have broader applicability to defining structure-kinetic relationships and guiding design of next-generation inhibitors.

biophysics↗

A Minimally Perturbative DARPin Probe for Quantitative Fluorescence Imaging of the Human TCR-CD3 Complex

Fluorescence microscopy is a powerful tool for dissecting the molecular mechanisms of T-cell antigen recognition in living cells, but its quantitative insight critically depends on non-perturbative, high-quality probes. Here, we repurpose a small (~15 kDa) CD3epsilon-binding DARPin (designed ankyrin repeat proteins) to a fluorescent label for T-cell receptor (TCR)/CD3 complexes on primary human CD8+ T-cells, with the aim of generating a powerful tool for quantitative analysis, single-molecule tracking, and advanced imaging of TCR dynamics. We show that the DARPin binds CD3{varepsilon} with high affinity and selectivity and using single molecule tracking and brightness analysis, we characterize the TCR-CD3 diffusion behavior and show that the DARPin binds to both CD3epsilon; subunits. Importantly, labeling preserves antigen sensitivity: on supported lipid bilayers presenting cognate pMHC, T-cells remain responsive, assemble synapses, form TCR microclusters, and initiate signaling similar to unlabeled controls. We further demonstrate compatibility with lattice light-sheet microscopy for volumetric imaging of T-cell - APC interactions in living cells. Together, these results establish DARPins as versatile, minimally perturbative probes for high resolution, quantitative studies of T cell synapse organization and signaling.

biophysics↗

Monitoring intramolecular dynamics across two regions of the mouse prion protein during misfolding and oligomerization using fluorescence correlation spectroscopy

It is important to determine whether native state dynamics drive the misfolding and oligomerization of the prion protein, which are important events in prion disease, and how they are modulated by conformational conversion. Native (N) mouse prion protein (moPrP) is known to form small (OS) and large (OL) oligomers rich in {beta}-sheet, and in this study, photoinduced electron transfer-fluorescence correlation spectroscopy (PET-FCS) has been used to characterize intramolecular dynamics within individual monomeric units in both isolated OS and OL, as well as the diffusion properties of the oligomers. It is estimated that OS and OL comprise of about 15 and 55 monomeric units, respectively. Microsecond dynamics at each of the two regions that are the 1-3 and 2-3 interfaces of native protein are distinct in N, OS and OL, although they occur on very similar timescales. Analysis of the evolution of the distribution of diffusion times, determined using the maximum entropy method, indicates heterogeneity in the oligomerization reaction. Analysis of the change in the fluctuations which occur in two different timescales in the native state ensemble shows that they are damped more at the erstwhile 1-3 interface than the erstwhile 2-3 interface. The difference in the extent of damping at the erstwhile 1-3 and 2-3 interfaces can be explained on the basis of the structural changes known to occur across each region. The changes in dynamics occur concurrently in both regions, indicating that the structural changes accompanying conformational conversion also occur simultaneously during the oligomerization of moPrP.

biophysics↗