Clade 2.3.4.4b H5N1 high pathogenicity avian influenza virus (HPAIV) from the 2021/22 epizootic is highly duck adapted and poorly adapted to chickens

James, J.; Billington, E.; Warren, C. J.; De Sliva, D.; Di Genova, C.; Airey, M.; Meyer, S. M.; Lewis, T.; Peers-Dent, J.; Thomas, S. S.; Lofts, A.; Furman, N.; Slomka, M. J.; Brown, I. H.; Banyard, A. C.

doi:10.1101/2023.02.07.527270

bioRxiv · 10.1101/2023.02.07.527270

Clade 2.3.4.4b H5N1 high pathogenicity avian influenza virus (HPAIV) from the 2021/22 epizootic is highly duck adapted and poorly adapted to chickens

James, J.·Billington, E.·Warren, C. J.·De Sliva, D.·Di Genova, C.·Airey, M.·Meyer, S. M.·Lewis, T.·Peers-Dent, J.·Thomas, S. S.·Lofts, A.·Furman, N.·Slomka, M. J.·Brown, I. H.·Banyard, A. C.

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Abstract

The 2021/2022 epizootic of high pathogenicity avian influenza (HPAIV) remains one of the largest ever in the UK, being caused by a clade 2.3.4.4b H5N1 HPAIV. This epizootic affected more than 145 poultry premises, most likely through independent incursion from infected wild birds, supported by more than 1700 individual detections of H5N1 from wild bird mortalities. Here an H5N1 HPAIV, representative of this epizootic (H5N1-21), was used to investigate its virulence, pathogenesis and transmission in layer chickens and pekin ducks, two species of epidemiological importance. We inoculated both avian species with decreasing H5N1-21 doses. The virus was highly infectious in ducks, with high infection levels and accompanying shedding of viral RNA, even in ducks inoculated with the lowest dose, reflecting the strong waterfowl adaptation of the clade 2.3.4.4 HPAIVs. Duck-to-duck transmission was very efficient, coupled with high environmental contamination. H5N1-21 was frequently detected in water sources, serving as likely sources of infection for ducks, but inhalable dust and aerosols represented low transmission risks. In contrast, chickens inoculated with the highest dose exhibited lower rates of infection compared to ducks. There was no evidence for experimental H5N1-21 transmission to any naive chickens, in two stocking density scenarios, coupled with minimal and infrequent contamination being detected in the chicken environment. Systemic viral dissemination to multiple organs reflected the pathogenesis and high mortalities in both species. In summary, the H5N1-21 virus is highly infectious and transmissible in anseriformes, yet comparatively poorly adapted to galliformes, supporting strong host preferences for wild waterfowl. Key environmental matrices were also identified as being important in the epidemiological spread of this virus during the continuing epizootic.

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James, J., Billington, E., Warren, C. J., De Sliva, D., Di Genova, C., Airey, M., Meyer, S. M., Lewis, T., Peers-Dent, J., Thomas, S. S., Lofts, A., Furman, N., Slomka, M. J., Brown, I. H., Banyard, A. C.. 2023-02-07. Clade 2.3.4.4b H5N1 high pathogenicity avian influenza virus (HPAIV) from the 2021/22 epizootic is highly duck adapted and poorly adapted to chickens. https://doi.org/10.1101/2023.02.07.527270

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