Expanding the HDAC druggable landscape beyond enzymatic inhibition

Olivet, J.; Choi, S. G.; Sierra, S.; O'Grady, T. M.; de la Fuente Revenga, M.; Laval, F.; Botchkarev, V. V.; Gorgulla, C.; Coote, P. W.; Blavier, J.; Geffken, E. A.; Lakhani, J.; Song, K.; Yeoh, Z. C.; Hu, B.; Varca, A. C.; Bruyr, J.; Ibrahim, S.; Jivanjee, T.; Bromley, J. D.; Nyquist, S. K.; Richardson, A.; Yue, H.; Wang, Y.; Calonghi, N.; Stephan, A.; Spirohn, K.; Vertommen, D.; Baietti, M. F.; Lemmens, I.; Seo, H.-S.; Dozmorov, M. G.; Willems, L.; Tavernier, J.; Das, K.; Leucci, E.; Hochkoeppler, A.; Sun, Z.-Y. J.; Calderwood, M. A.; Hao, T.; Shalek, A. K.; Hill, D. E.; Boeszoermenyi, A.; A

doi:10.1101/2022.12.07.519454

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bioRxiv · 10.1101/2022.12.07.519454

Expanding the HDAC druggable landscape beyond enzymatic inhibition

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Abstract

Enzymatic pockets such as those of histone deacetylases (HDACs) are among the most favored targets for drug development. However, enzymatic inhibitors often exhibit low selectivity and high toxicity due to targeting multiple enzyme paralogs, which are often involved in distinct multisubunit complexes. Here, we report the discovery and characterization of a non-enzymatic small molecule inhibitor of HDAC transcriptional repression functions with comparable anti-tumor activity to the enzymatic HDAC inhibitor Vorinostat, and anti-psychedelic activity of an HDAC2 knockout in vivo. We highlight that these phenotypes are achieved while modulating the expression of 20- and 80-fold fewer genes than enzymatic and genetic inhibition in the respective models. Thus, by achieving the same biological outcomes as established therapeutics while impacting a dramatically smaller number of genes, inhibitors of protein-protein interactions can offer important advantages in improving the selectivity of epigenetic modulators. GRAPHICAL ABSTRACT O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=200 SRC="FIGDIR/small/519454v2_ufig1.gif" ALT="Figure 1"> View larger version (96K): org.highwire.dtl.DTLVardef@3a4e68org.highwire.dtl.DTLVardef@1f1be2corg.highwire.dtl.DTLVardef@1fc5e94org.highwire.dtl.DTLVardef@1a54790_HPS_FORMAT_FIGEXP M_FIG C_FIG

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Olivet, J., Choi, S. G., Sierra, S., O'Grady, T. M., de la Fuente Revenga, M., Laval, F., Botchkarev, V. V., Gorgulla, C., Coote, P. W., Blavier, J., Geffken, E. A., Lakhani, J., Song, K., Yeoh, Z. C., Hu, B., Varca, A. C., Bruyr, J., Ibrahim, S., Jivanjee, T., Bromley, J. D., Nyquist, S. K., Richardson, A., Yue, H., Wang, Y., Calonghi, N., Stephan, A., Spirohn, K., Vertommen, D., Baietti, M. F., Lemmens, I., Seo, H.-S., Dozmorov, M. G., Willems, L., Tavernier, J., Das, K., Leucci, E., Hochkoeppler, A., Sun, Z.-Y. J., Calderwood, M. A., Hao, T., Shalek, A. K., Hill, D. E., Boeszoermenyi, A., A. 2022-12-08. Expanding the HDAC druggable landscape beyond enzymatic inhibition. https://doi.org/10.1101/2022.12.07.519454

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