Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in lung adenocarcinoma

Dolgalev, I.; Zhou, H.; Shenker-Tauris, N.; Le, H.; Sakellaropoulos, T.; Coudray, N.; Zhu, K.; Vasudevaraja, V.; Yeaton, A.; Goparaju, C. V.; Li, Y.; Sulaiman, I.; Tsay, J.-C. J.; Meyn, P.; Mohamed, H.; Sydney, I.; Ramaswami, S.; Narula, N.; Kulicke, R.; Davis, F. P.; Stransky, N.; Smolen, G. A.; Cheng, W.-Y.; Cai, J.; Punekar, S.; Velcheti, V.; Poirier, J. T.; Neel, B.; Wong, K.-K.; Chiriboga, L.; Heguy, A.; Papagiannakopoulos, T.; Snuderl, M.; Segal, L. N.; Moreira, A. L.; Pass, H. I.; Tsirigos, A.

doi:10.1101/2022.11.10.516003

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bioRxiv · 10.1101/2022.11.10.516003

Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in lung adenocarcinoma

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Abstract

Early-stage lung adenocarcinoma is typically treated by surgical resection of the tumor. While in the majority of cases surgery can lead to cure, approximately 30% of patients progress. Despite intense efforts to map the genetic landscape of early-stage lung tumors, there has been limited success in discovering accurate biomarkers that can predict clinical outcomes. Meanwhile, the role of the tumor-adjacent tissue in cancer progression has been largely ignored. To test whether tumor-adjacent tissue can be informative of progression-free survival and to probe the underlying molecular pathways involved, we designed a multi-omic study in both tumor and matched tumor-adjacent histologically normal lung tissue from the same patient. Our study includes 143 treatment naive stage I cases with long-term patient follow-up and is, to our knowledge, the largest such study with the longest follow-up. We performed a comprehensive histologic characterization of all tumors, mapped the mutational landscape and probed the transcriptome of both tumor and adjacent normal tissue. We evaluated the predictive power of each data modality and showed that the transcriptome of tumor-adjacent histologically normal lung tissue is the only reliable predictor of clinical outcome. Unbiased discovery of co-expressed gene modules revealed that inflammatory pathways are upregulated in the tumor-adjacent tissue of patients at high risk for disease progression. Furthermore, single-cell transcriptome analysis in the tumor-adjacent lung demonstrated that progression-associated inflammatory signatures were broadly expressed by both immune and non-immune cells including mesothelial cells, alveolar type 2 cells and fibroblasts, CD1 dendritic cells and MAST cells. Collectively, our studies suggest that molecular profiling of tumor-adjacent tissue can identify patients that are at high risk for disease progression.

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Dolgalev, I., Zhou, H., Shenker-Tauris, N., Le, H., Sakellaropoulos, T., Coudray, N., Zhu, K., Vasudevaraja, V., Yeaton, A., Goparaju, C. V., Li, Y., Sulaiman, I., Tsay, J.-C. J., Meyn, P., Mohamed, H., Sydney, I., Ramaswami, S., Narula, N., Kulicke, R., Davis, F. P., Stransky, N., Smolen, G. A., Cheng, W.-Y., Cai, J., Punekar, S., Velcheti, V., Poirier, J. T., Neel, B., Wong, K.-K., Chiriboga, L., Heguy, A., Papagiannakopoulos, T., Snuderl, M., Segal, L. N., Moreira, A. L., Pass, H. I., Tsirigos, A.. 2022-11-15. Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in lung adenocarcinoma. https://doi.org/10.1101/2022.11.10.516003

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