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bioRxiv · 10.1101/2022.11.02.514913

Cellpanelr: identify predictive biomarkers from cell line panel response data

Wassarman, D. R.·Wu, T.·Shokat, K.
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Abstract

SummaryCellpanelr is an open-source R package and web application for analyzing user-generated cell panel screens using DepMap data sets. Cellpanelr can be used to identify mutation and expression biomarkers of cell line response, increasing the value and accessibility of cell panel experiments such as relative sensitivities to cancer drugs. Availability and implementationHosted web application is available from shinyapps.io (https://dwassarman.shinyapps.io/cellpanelr). Source code and installation instructions are available from GitHub (https://github.com/dwassarman/cellpanelr). Contactdwassar@gmail.com

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Wassarman, D. R., Wu, T., Shokat, K.. 2022-11-04. Cellpanelr: identify predictive biomarkers from cell line panel response data. https://doi.org/10.1101/2022.11.02.514913

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