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bioRxiv · 10.1101/2022.09.07.506696

CIDP: A multi-functional platform for designing CRISPR sgRNAs

Xu, D.·Zhang, J.·Zhao, X.·Jiang, H.·Ma, X.·Pan, W.
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Abstract

Most of sgRNA-design tools can be run under the precondition of the choice of closely-related species. However, it is hard to select an ideal closely-related species, as more and more different species were studied, and this situation was particular seriously in plant studies. Here, we introduced a new software, CRISPR Integrated Design Platform (CIDP), to solve the problem by allowing users to input genomic sequences for designing sgRNAs. The main function of CIDP was to design sgRNAs after building the sgRNA database using the input genomic sequences. Furthermore, in order to minimize the off-target effects, CIDP will search sgRNAs that appear only once across the whole genome on the target sequences. Meanwhile, CIDP set relevant functions to identify shared sgRNAs of a group of genes. Moreover, we also set primer design and sequence extraction functions in CIDP to help users design sgRNAs efficiently.

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Xu, D., Zhang, J., Zhao, X., Jiang, H., Ma, X., Pan, W.. 2022-09-07. CIDP: A multi-functional platform for designing CRISPR sgRNAs. https://doi.org/10.1101/2022.09.07.506696

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