Integration of external biomass reactions into existing metabolic models

Garcia, M. I. M.; Pacheco, M. P.; Sauter, T.

doi:10.1101/2022.08.01.502323

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bioRxiv · 10.1101/2022.08.01.502323

Integration of external biomass reactions into existing metabolic models

Garcia, M. I. M.·Pacheco, M. P.·Sauter, T.

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Abstract

Currently, seven biomass objective functions have been defined in human metabolic reconstructions. The integration of published biomass reactions into alternative models can contribute to the prediction power of the model. Thus, in this work, we present a workflow to integrate reactions and biomass functions originating from several genome-scale reconstructions into models other than their home models. Additionally, a benchmark to identify the biomass that confers the highest prediction accuracy in terms of gene essentiality and growth predictions is provided. For complete details on the use and execution of this protocol, please refer to Moscardo Garcia et al. (2021).

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Garcia, M. I. M., Pacheco, M. P., Sauter, T.. 2022-08-03. Integration of external biomass reactions into existing metabolic models. https://doi.org/10.1101/2022.08.01.502323

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