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bioRxiv · 10.1101/2022.08.01.502297

ObiWan-Microbi: OMERO-based integrated workflow for annotating microbes in the cloud

Seiffarth, J.·Scherr, T.·Wollenhaupt, B.·Neumann, O.·Scharr, H.·Kohlheyer, D.·Mikut, R.·Noeh, K.
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Abstract

SummaryReliable deep learning segmentation for microfluidic live-cell imaging requires comprehensive ground truth data. ObiWan-Microbi is a microservice platform combining the strength of state-of-the-art technologies into a unique integrated workflow for data management and efficient ground truth generation for instance segmentation, empowering collaborative semi-automated image annotation in the cloud. Availability and ImplementationObiWan-Microbi is open-source and available under the MIT license at https://github.com/hip-satomi/ObiWan-Microbi, along documentation and usage examples. Contactk.noeh@fz-juelich.de Supplementary informationSupplementary data are available online.

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Seiffarth, J., Scherr, T., Wollenhaupt, B., Neumann, O., Scharr, H., Kohlheyer, D., Mikut, R., Noeh, K.. 2022-08-01. ObiWan-Microbi: OMERO-based integrated workflow for annotating microbes in the cloud. https://doi.org/10.1101/2022.08.01.502297

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