Heterogeneity of RNA editing in mesothelioma and how RNA editing enzyme ADAR2 affects mesothelioma cell growth, response to chemotherapy and tumor microenvironment

Hariharan, A.; Qi, W.; Rehrauer, H.; Wu, L.; Ronner, M.; Wipplinger, M.; Kresoja-Rakic, J.; Sun, S.; Oton-Gonzales, L.; Sculco, M.; Serre-Beinier, V.; Meiller, C.; Blanquart, C.; Fonteneau, J.-F.; Vrugt, B.; Rueschoff, J. H.; Opitz, I.; JEAN, D.; de Perrot, M.; Felley-Bosco, E.

doi:10.1101/2022.07.12.499727

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bioRxiv · 10.1101/2022.07.12.499727

Heterogeneity of RNA editing in mesothelioma and how RNA editing enzyme ADAR2 affects mesothelioma cell growth, response to chemotherapy and tumor microenvironment

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Abstract

We previously observed increased levels of adenosine-deaminase-acting-on-dsRNA (Adar)-dependent RNA editing during mesothelioma development in mice exposed to asbestos. The aim of this study was to characterize and assess the role of ADAR-dependent RNA editing in mesothelioma. Tumors and mesothelioma primary cultures have higher ADAR-mediated RNA editing compared to mesothelial cells. Unsupervised clustering of editing in different genomic regions revealed heterogeneity between tumor samples as well as mesothelioma primary cultures. ADAR2 expression levels are higher in BRCA1-associated protein 1 wild-type tumors, with corresponding changes in RNA editing in transcripts and 3UTR. ADAR2 knockdown and rescue models indicated a role in cell proliferation, altered cell cycle, increased sensitivity to antifolate treatment and type-1 interferon signaling upregulation, leading to changes in the microenvironment in vivo. Our data indicate that RNA editing contributes to mesothelioma heterogeneity and highlights an important role of ADAR2 not only in growth regulation in mesothelioma but also chemotherapy response, in addition to regulating inflammatory response downstream of sensing nucleic acid structures.

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Hariharan, A., Qi, W., Rehrauer, H., Wu, L., Ronner, M., Wipplinger, M., Kresoja-Rakic, J., Sun, S., Oton-Gonzales, L., Sculco, M., Serre-Beinier, V., Meiller, C., Blanquart, C., Fonteneau, J.-F., Vrugt, B., Rueschoff, J. H., Opitz, I., JEAN, D., de Perrot, M., Felley-Bosco, E.. 2022-07-13. Heterogeneity of RNA editing in mesothelioma and how RNA editing enzyme ADAR2 affects mesothelioma cell growth, response to chemotherapy and tumor microenvironment. https://doi.org/10.1101/2022.07.12.499727

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