A macroecological law links abundance correlations with phylogenetic similarity in microbiomes

Abstract

Multiple ecological forces act together to shape the composition of microbial communities. Phyloecology approaches --which combine phylogenetic relationships with community ecology-- have the potential to disentangle such forces, but are often hard to connect with quantitative predictions from theoretical models. On the other hand, macroecology, which focuses on statistical patterns of abundance and diversity, provides natural connections with theoretical models but often neglects inter-speficic correlations and interactions. Here, we propose a unified framework combining both such approaches to analyze microbial communities. In particular, by using both cross-sectional and longitudinal metagenomic data for species abundances, we reveal the existence of a novel empirical macroecological law establishing that correlations in species-abundance fluctuations across communities decay from positive to null values as a function of phylogenetic similarity in a consistent manner across ecologically distinct microbiomes. We formulate three mechanistic models --relying on alternative ecological forces-- that lead to radically different predictions. We conclude that the empirically observed macroecological pattern can be quantitatively explained as a result of shared fluctuating resources, i.e. environmental filtering and not e.g. as a consequence of species competition. Finally, we also show that the macroecological law is also valid for temporal data of a single community, and that the properties of delayed temporal correlations are reproduced by the model with environmental filtering.