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bioRxiv · 10.1101/2022.06.20.496801

Agent-based vs. equation-based multi-scale modeling for macrophage polarization

Minucci, S. B.·Heise, R. L.·Reynolds, A. M.
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Abstract

Macrophages show high plasticity and result in heterogenic subpopulations or polarized states identified by specific cellular markers. These immune cells are typically characterized as pro-inflammatory, or classically activated M1, and anti-inflammatory, or alternatively activated M2. However, a more precise definition places them along a spectrum of activation where they may exhibit a number of pro- or anti-inflammatory roles. To gain a greater understanding of the mechanisms of the immune response from macrophages and the balance between M1 and M2 activation, we utilized two different modeling techniques, ordinary differential equation (ODE) modeling and agent-based modeling (ABM), to simulate the spectrum of macrophage activation to general pro- and anti-inflammatory stimuli on an individual and multi-cell level. The ODE model includes two hallmark pro- and anti-inflammatory signaling pathways and the ABM incorporates similar M1-M2 dynamics but in a spatio-temporal platform. Both models link molecular signaling with cellular-level dynamics. We then performed simulations with various initial conditions to replicate different experimental setups. Similar results were observed in both models after tuning to a common calibrating experiment. Comparing the two models results sheds light on the important features of each modeling approach. When more data is available these features can be considered when choosing techniques to best fit the needs of the modeler and application.

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Minucci, S. B., Heise, R. L., Reynolds, A. M.. 2022-06-21. Agent-based vs. equation-based multi-scale modeling for macrophage polarization. https://doi.org/10.1101/2022.06.20.496801

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