Matrin3 regulates cell proliferation and spindle dynamics by regulating CDC14B alternative splicing

Muys, B. R.; Shrestha, R. L.; Anastasakis, D. G.; Pongor, L.; Li, X. L.; Grammatikakis, I.; Polash, A.; Harris, C. C.; Aladjem, M. I.; Basrai, M. A.; Hafner, M.; Lal, A.

doi:10.1101/2022.06.08.495349

bioRxiv · 10.1101/2022.06.08.495349

Matrin3 regulates cell proliferation and spindle dynamics by regulating CDC14B alternative splicing

Muys, B. R.·Shrestha, R. L.·Anastasakis, D. G.·Pongor, L.·Li, X. L.·Grammatikakis, I.·Polash, A.·Harris, C. C.·Aladjem, M. I.·Basrai, M. A.·Hafner, M.·Lal, A.

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Abstract

Matrin3 is an RNA-binding protein that affects diverse RNA-related processes, including mRNA splicing. While Matrin3 has been intensively studied in neurodegenerative diseases, its function in cancer remains unclear. Here, we discovered Matrin3-mediated regulation of mitotic spindle dynamics in colorectal cancer (CRC) cells. We identified bound and regulated Matrin3-target RNAs transcriptome-wide in CRC cells and found that Matrin3 broadly modulates mRNA splicing patterns. Among the top Matrin3 targets, we focused on CDC14B and found that Matrin3 loss increased inclusion of an exon containing a premature termination codon into the CDC14B transcript and simultaneous down-regulation of the standard CDC14B transcript. Selective knockdown of the CDC14B standard transcript phenocopied Matrin3 knockdown and exhibited reduced proliferation and defects in mitotic spindle formation, suggesting that CDC14B is a key downstream effector of Matrin3. Collectively, these data reveal an important role for the Matrin3/CDC14B axis in control of CRC cell proliferation and mitotic spindle formation.

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Muys, B. R., Shrestha, R. L., Anastasakis, D. G., Pongor, L., Li, X. L., Grammatikakis, I., Polash, A., Harris, C. C., Aladjem, M. I., Basrai, M. A., Hafner, M., Lal, A.. 2022-06-08. Matrin3 regulates cell proliferation and spindle dynamics by regulating CDC14B alternative splicing. https://doi.org/10.1101/2022.06.08.495349

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