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bioRxiv · 10.1101/2022.04.21.489108

METAbolomics data Balancing with Over-sampling Al-gorithms (META-BOA): an online resource for addressing class imbalance

Hashimoto-Roth, E.·Surendra, A.·Lavallee-Adam, M.·Bennett, S. A. L.·Cuperlovic-Culf, M.
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Abstract

MotivationClass imbalance, or unequal sample sizes between classes, is an increasing concern in machine learning for metabolomic and lipidomic data mining, which can result in overfitting for the over-represented class. Numerous methods have been developed for handling class imbalance, but they are not readily accessible to users with limited computational experience. Moreover, there is no resource that enables users to easily evaluate the effect of different over-sampling algorithms. ResultsMETAbolomics data Balancing with Over-sampling Algorithms (META-BOA) is a web-based application that enables users to select between four different methods for class balancing, followed by data visualization and classification of the sample to observe the augmentation effects. META-BOA outputs a newly balanced dataset, generating additional samples in the minority class, according to the users choice of Synthetic Minority Over-sampling Technique (SMOTE), Borderline-SMOTE (BSMOTE), Adaptive Synthetic (ADASYN), or Random Over-Sampling Examples (ROSE). META-BOA further displays both principal component analysis (PCA) and t-distributed stochastic neighbor embedding (t-SNE) visualization of data pre- and post-over-sampling. Random forest classification is utilized to compare sample classification in both the original and balanced datasets, enabling users to select the most appropriate method for their analyses. Availability and implementationMETA-BOA is available at https://complimet.ca/meta-boa. Supplementary InformationSupplementary material is available at Bioinformatics online.

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Hashimoto-Roth, E., Surendra, A., Lavallee-Adam, M., Bennett, S. A. L., Cuperlovic-Culf, M.. 2022-04-22. METAbolomics data Balancing with Over-sampling Al-gorithms (META-BOA): an online resource for addressing class imbalance. https://doi.org/10.1101/2022.04.21.489108

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