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bioRxiv · 10.1101/2022.04.08.487631

Structural and biophysical properties of FopA, a major outer membrane protein of Francisella tularensis

Fromme, P.·Nagaratnam, N.·Martin-Garcia, J. M.·Yang, J.-H.·Goode, M. R.·Ketalawa, G.·Craciunescu, F. M.·Zook, J. D.·Grant, T. D.·Fromme, R.·Hansen, D. T.
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Abstract

Francisella tularensis is an extremely infectious pathogen and a category A bioterrorism agent. It causes the highly contagious zoonosis, Tularemia. Currently, FDA approved vaccines against tularemia are unavailable. F. tularensis outer membrane protein A (FopA) is a well-studied virulence determinant and protective antigen against tularemia. It is a major outer membrane protein (Omp) of F. tularensis. However, FopA-based therapeutic intervention is hindered due to lack of complete structural information for membrane localized mature FopA. In our study, we established recombinant expression, monodisperse purification, crystallization and X-ray diffraction ([~]6.5 [A]) of membrane localized mature FopA. Further, we performed bioinformatics and biophysical experiments to unveil its structural organization in the outer membrane. FopA consists of 393 amino acids and has less than 40% sequence identity to known bacterial Omps. Using comprehensive sequence alignments and structure predictions together with existing partial structural information, we propose a two-domain organization for FopA. Circular dichroism spectroscopy and heat modifiability assay confirmed FopA has a {beta}-barrel domain consistent with alphafold2s prediction of an eight stranded {beta}-barrel at the N-terminus. Small angle X-ray scattering (SAXS) and native-polyacrylamide gel electrophoresis revealed FopA purified in detergent micelles is predominantly dimeric. Molecular density derived from SAXS at 31 [A] shows putative dimeric N-terminal {beta}-barrels surrounded by detergent corona and connected to C-terminal domains via flexible linker. Disorder analysis predicts N- and C-terminal domains are interspersed by a long intrinsically disordered region and alphafold2 predicts this region to be largely unstructured. Taken together, we propose a dimeric, two-domain organization of FopA in the outer membrane: the N-terminal {beta}-barrel is membrane embedded, provides dimerization interface and tethers to membrane extrinsic C-terminal domain via long flexible linker. Structure determination of membrane localized mature FopA is essential to understand its role in pathogenesis and develop anti-tularemia therapeutics. Our results pave the way towards it.

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Fromme, P., Nagaratnam, N., Martin-Garcia, J. M., Yang, J.-H., Goode, M. R., Ketalawa, G., Craciunescu, F. M., Zook, J. D., Grant, T. D., Fromme, R., Hansen, D. T.. 2022-04-09. Structural and biophysical properties of FopA, a major outer membrane protein of Francisella tularensis. https://doi.org/10.1101/2022.04.08.487631

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