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bioRxiv · 10.1101/2022.02.24.481790

EagleImp-Web: A Fast and Secure Genotype Phasing and Imputation Web Service using Field-Programmable Gate Arrays

Wienbrandt, L.·Priess, C.·Kässens, J. C.·Franke, A.·Uhing, F.·Ellinghaus, D.
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Abstract

Imputation web servers have been developed that allow phasing and imputation of genome-wide data without the need for own computing resources. However, their terms of use, data sharing with third parties, the security architecture of the web service, and the algorithms and parameter settings used are only partially disclosed. We developed EagleImp-Web, a fast, secure and convenient web service for phasing and imputation of genome-wide data. The web service uses technical improvements in phasing and imputation algorithms and a field-programmable gate array (FPGA) accelerator design to reduce computation time without loss of phasing and imputation quality. Other key features include no exposure of user information and input/output data to third parties, high data security and fast secure download, user authentication through 2-factor authentication, full control in managing user accounts, and full transparency of algorithms and their settings. EagleImp-Web provides simple and convenient functionalities for monitoring running jobs and selecting parameter settings and output information. Due to the speed advantage over a purely CPU-based implementation, EagleImp-Web offers the user the ability to choose a more resource-intensive parameter setting in exchange for computation time to further improve phasing and imputation quality. EagleImp-Web is freely availabe at https://hybridcomputing.ikmb.uni-kiel.de.

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Wienbrandt, L., Priess, C., Kässens, J. C., Franke, A., Uhing, F., Ellinghaus, D.. 2022-02-26. EagleImp-Web: A Fast and Secure Genotype Phasing and Imputation Web Service using Field-Programmable Gate Arrays. https://doi.org/10.1101/2022.02.24.481790

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