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bioRxiv · 10.1101/2022.02.03.479067

CDMAP/CDVIS: Context-dependent Mutation Analysis Package and Visualization Software

Patton, D. L.·Mele, P.·Navarro, J.·Cardenas, T.·Sung, W.
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Abstract

The Context-dependent Mutation Analysis Package and Visualization Software (CDMAP/CDVIS) is an automated, modular toolkit used for analysis and visualization of context-dependent mutation patterns (site-specific variation in mutation rate from neighboring-nucleotide effects). The CDMAP algorithm calculates context-dependent mutation rates in chromosomes or replichores, and can generate high-resolution figures to analyze variation in mutation rate across spatiotemporal scales. Output from CDMAP can be integrated into CDVIS, an interactive database for visualizing mutation patterns across multiple taxa simultaneously.

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Patton, D. L., Mele, P., Navarro, J., Cardenas, T., Sung, W.. 2022-02-06. CDMAP/CDVIS: Context-dependent Mutation Analysis Package and Visualization Software. https://doi.org/10.1101/2022.02.03.479067

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