OMAMO: orthology-based model organism selection

Nicheperovich, A.; Altenhoff, A. M.; Dessimoz, C.; Majidian, S.

doi:10.1101/2021.11.04.467067

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bioRxiv · 10.1101/2021.11.04.467067

OMAMO: orthology-based model organism selection

Nicheperovich, A.·Altenhoff, A. M.·Dessimoz, C.·Majidian, S.

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Abstract

SummaryThe conservation of pathways and genes across species has allowed scientists to use non-human model organisms to gain a deeper understanding of human biology. However, the use of traditional model systems such as mice, rats, and zebrafish is costly, time-consuming and increasingly raises ethical concerns, which highlights the need to search for less complex model organisms. Existing tools only focus on the few well-studied model systems, most of which are complex animals. To address these issues, we have developed Orthologous Matrix and Model Organisms, a software and a website that provide the user with the best simple organism for research into a biological process of interest based on orthologous relationships between the human and the species. The outputs provided by the database were supported by a systematic literature review. Availability and implementationhttps://omabrowser.org/omamo/, https://github.com/DessimozLab/omamo Contactchristophe.dessimoz@unil.ch and sina.majidian@unil.ch

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Nicheperovich, A., Altenhoff, A. M., Dessimoz, C., Majidian, S.. 2021-11-05. OMAMO: orthology-based model organism selection. https://doi.org/10.1101/2021.11.04.467067

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