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bioRxiv · 10.1101/2021.11.02.466936

Bright, fluorogenic and photostable avidity probes for RNA imaging

Bühler, B.·Benderoth, A.·Englert, D.·Grün, F.·Schokolowski, J.·Jäschke, A.·Sunbul, M.
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Abstract

Fluorescent light-up aptamers (FLAPs) emerged as valuable tools to visualize RNA, but are mostly limited by poor brightness, low photostability and high fluorescence background. In this study, we combine bivalent (silicon) rhodamine fluorophores with dimeric FLAPs to yield bright and photostable complexes with low picomolar dissociation constants. Our avidity-based approach resulted in extreme binding strength and high fluorogenicity, enabling single mRNA tracking in living cells.

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Bühler, B., Benderoth, A., Englert, D., Grün, F., Schokolowski, J., Jäschke, A., Sunbul, M.. 2021-11-02. Bright, fluorogenic and photostable avidity probes for RNA imaging. https://doi.org/10.1101/2021.11.02.466936

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