Classifying Literature Extracted Events for Automated Model Extension

Hansen, C. E.; Kisslinger, J.; Krishna, N.; Holtzapple, E.; Ahmed, Y.; Miskov-Zivanov, N.

doi:10.1101/2021.09.30.462421

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bioRxiv · 10.1101/2021.09.30.462421

Classifying Literature Extracted Events for Automated Model Extension

Hansen, C. E.·Kisslinger, J.·Krishna, N.·Holtzapple, E.·Ahmed, Y.·Miskov-Zivanov, N.

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Abstract

1In this study, we investigate the integration of three previously developed tools: FLUTE, VIOLIN, and CLARINET. We show how using these tools together adds additional capabilities in extending models from relevant research literature. We illustrate how we plan to address current modeling pitfalls with these tools (such as machine reading errors and literature volume), and how we plan to use these tools as the foundation for an automated model extension framework. Documentation and links to our tools can be found at: violin-tool.readthedocs.io clarinet-docs.readthedocs.io flute.readthedocs.io

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Hansen, C. E., Kisslinger, J., Krishna, N., Holtzapple, E., Ahmed, Y., Miskov-Zivanov, N.. 2021-10-01. Classifying Literature Extracted Events for Automated Model Extension. https://doi.org/10.1101/2021.09.30.462421

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