Comprehensive analysis of mutational signatures in pediatric cancers

Thatikonda, V.; Islam, S. M. A.; Jones, B. C.; Groebner, S. N.; Warsow, G.; Hutter, B.; Huebschmann, D.; Froehling, S.; Blattner-Johnson, M.; Jones, D. T. W.; Alexandrov, L. B.; Pfister, S. M.; Jaeger, N.

doi:10.1101/2021.09.28.462210

bioRxiv · 10.1101/2021.09.28.462210

Comprehensive analysis of mutational signatures in pediatric cancers

Thatikonda, V.·Islam, S. M. A.·Jones, B. C.·Groebner, S. N.·Warsow, G.·Hutter, B.·Huebschmann, D.·Froehling, S.·Blattner-Johnson, M.·Jones, D. T. W.·Alexandrov, L. B.·Pfister, S. M.·Jaeger, N.

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Abstract

Analysis of mutational signatures can reveal the underlying molecular mechanisms of the processes that have imprinted the somatic mutations found in a cancer genome. Here, we present a pan-cancer mutational signatures analysis of single base substitutions (SBS) and small insertion and deletions (ID) in pediatric cancers encompassing 537 whole genome sequenced tumors from 20 molecularly defined cancer subtypes. We identified only a small number of mutational signatures active in pediatric cancers when compared to the previously analyzed adult cancers. Further, we report a significant difference in the proportion of pediatric tumors which show homologous recombination repair defect signature SBS3 compared to prior analyses. Correlating genomic alterations with signature activities, we identified an association of TP53 mutation status with substitution signatures SBS2, SBS8, SBS13 and indel signatures ID2 and ID9, as well as chromothripsis associated with SBS8, SBS40 and ID9. This analysis provides a systematic overview of COSMIC v.3 SBS and ID mutational signatures active across pediatric cancers, which is highly relevant for understanding tumor biology as well as enabling future research in defining biomarkers of treatment response.

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Thatikonda, V., Islam, S. M. A., Jones, B. C., Groebner, S. N., Warsow, G., Hutter, B., Huebschmann, D., Froehling, S., Blattner-Johnson, M., Jones, D. T. W., Alexandrov, L. B., Pfister, S. M., Jaeger, N.. 2021-09-29. Comprehensive analysis of mutational signatures in pediatric cancers. https://doi.org/10.1101/2021.09.28.462210

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