Little hope for the polyploid endemic Pyrenean Larkspur (Delphinium montanum): evidences from population genomics and Ecological Niche Modelling

Salvado, P.; Aymerich Boixader, P.; Parera, J.; Vila Bonfill, A.; Martin, M.; Quelennec, C.; Lewin, J.-M.; Hinoux, V.; Bertrand, J. A. M.

doi:10.1101/2021.09.15.460086

bioRxiv · 10.1101/2021.09.15.460086

Little hope for the polyploid endemic Pyrenean Larkspur (Delphinium montanum): evidences from population genomics and Ecological Niche Modelling

Salvado, P.·Aymerich Boixader, P.·Parera, J.·Vila Bonfill, A.·Martin, M.·Quelennec, C.·Lewin, J.-M.·Hinoux, V.·Bertrand, J. A. M.

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Abstract

Species endemic to restricted geographical ranges represent a particular conservation issue, be it for their heritage interest. In a context of global change, this is particularly the case for plants which belong to high-mountain ecosystems and, because of their ecological requirements, are doomed to survive or disappear on their sky islands. The Pyrenean Larkspur (Delphinium montanum, Ranunculaceae) is endemic to the Eastern part of the Pyrenees (France and Spain). It is now only observable at a dozen of localities and some populations show signs of decline, such as a recurrent lack of flowering. Implementing population genomic approach (e.g. RAD-seq like) is particularly useful to understand genomic patterns of diversity and differentiation in order to provide recommendations in term of conservation. However, it remains challenging for species such as D. montanum that are autotetraploid with a large genome size (1C-value > 10 pg) as most methods currently available were developed for diploid species. A Bayesian framework able to call genotypes with uncertainty allowed us to assess genetic diversity and population structure in this system. Our results show evidence for inbreeding (mean GIS = 0.361) within all the populations and substantial population structure (mean GST = 0.403) at the metapopulation level. In addition to a lack of connectivity between populations, spatial projections of Ecological Niche Modelling analyses under different climatic scenarios predict a dramatic decrease of suitable habitat for D. montanum in the future. Based on these results, we discuss the relevance and feasibility of different conservation measures.

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Salvado, P., Aymerich Boixader, P., Parera, J., Vila Bonfill, A., Martin, M., Quelennec, C., Lewin, J.-M., Hinoux, V., Bertrand, J. A. M.. 2021-09-16. Little hope for the polyploid endemic Pyrenean Larkspur (Delphinium montanum): evidences from population genomics and Ecological Niche Modelling. https://doi.org/10.1101/2021.09.15.460086

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