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bioRxiv · 10.1101/2021.08.29.458140

BiomeHorizon: visualizing microbiome time series data in R

Fink, I.·Abdill, R. J.·Blekhman, R.·Grieneisen, L.
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Abstract

SummaryA key aspect of microbiome research is analysis of longitudinal dynamics using time series data. A method to visualize both the proportional and absolute change in the abundance of multiple taxa across multiple subjects over time is needed. We developed BiomeHorizon, an open-source R package that visualizes longitudinal compositional microbiome data using horizon plots. Availability and ImplementationBiomeHorizon is available at https://github.com/blekhmanlab/biomehorizon/ and released under the MIT license. A guide with step-by-step instructions for using the package is provided at https://blekhmanlab.github.io/biomehorizon/. The guide also provides code to reproduce all plots in this manuscript. Contactlgrienei@umn.edu, blekhman@umn.edu, iafink@uchicago.edu Supplementary informationNone

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Fink, I., Abdill, R. J., Blekhman, R., Grieneisen, L.. 2021-08-31. BiomeHorizon: visualizing microbiome time series data in R. https://doi.org/10.1101/2021.08.29.458140

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