Non-Viral Engineering of CAR-NK and CAR-T cells using the Tc Buster Transposon System™

Pomeroy, E. J.; Lahr, W. S.; Chang, J. W.; Krueger, J. B.; Wick, B. J.; Slipek, N. J.; Skeate, J. G.; Webber, B. R.; Moriarity, B. S.

doi:10.1101/2021.08.02.454772

bioRxiv · 10.1101/2021.08.02.454772

Non-Viral Engineering of CAR-NK and CAR-T cells using the Tc Buster Transposon System™

Pomeroy, E. J.·Lahr, W. S.·Chang, J. W.·Krueger, J. B.·Wick, B. J.·Slipek, N. J.·Skeate, J. G.·Webber, B. R.·Moriarity, B. S.

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Abstract

Cancer immunotherapy using T cells and NK cells modified with viral vectors to express a chimeric antigen receptor (CAR) has shown remarkable efficacy in treating hematological malignancies in clinical trials. However, viral vectors are limited in their cargo size capacity, and large-scale manufacturing for clinical use remains complex and cost prohibitive. As an alternative, CAR delivery via DNA transposon engineering is a superior and cost-effective production method. Engineering via transposition is accomplished using a two-component system: a plasmid containing a gene expression cassette flanked by transposon inverted terminal repeats (ITRs) paired with a transposase enzyme that binds to the ITRs, excises the transposon from the plasmid, and stably integrates the transposon into the genome. Here, we used the newly developed hyperactive Tc Buster (Bio-Techne) transposon system to deliver a transposon containing a multicistronic expression cassette (CD19-CAR, mutant DHFR, and EGFP) to primary human peripheral blood (PB) NK cells and T cells. We optimized methods to avoid DNA toxicity and maximize efficiency. Our cargo contained a mutant dihydrofolate reductase (DHFR) which allowed us to enrich for stable transposon integration using methotrexate (MTX) selection. We then tested CAR-NK and CAR-T cells in functional assays against CD19-expressing Raji cells. CAR-expressing NK and T cells produced significantly more cytokines than CAR-negative controls and efficiently killed target cells. We recognize that cryopreservation manufactured CAR-expressing cells will be necessary for clinical translation. We observed reduced cytotoxicity of CAR-NK cells immediately after thaw, but increasing the NK dose overcame this loss of function. Our work provides a platform for robust delivery of multicistronic, large cargo via transposition to primary human NK and T cells. We demonstrate that CAR-expressing cells can be enriched using MTX selection, while maintaining high viability and function. This non-viral approach represents a versatile, safe, and cost-effective option for the manufacture of CAR-NK and CAR-T cells compared to viral delivery.

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Pomeroy, E. J., Lahr, W. S., Chang, J. W., Krueger, J. B., Wick, B. J., Slipek, N. J., Skeate, J. G., Webber, B. R., Moriarity, B. S.. 2021-08-04. Non-Viral Engineering of CAR-NK and CAR-T cells using the Tc Buster Transposon System™. https://doi.org/10.1101/2021.08.02.454772

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