CRISPR-Cas9 Screen Reveals PSMB3 Contributes to Gliomagenesis Through Proteasome-Dependent and Independent Mechanisms

Baisiwala, S.; Budhiraja, S.; Zolp, A.; Nandoliya, K.; Chen, L.; Park, C.; Perrault, E.; Saathoff, M.; Dmello, C.; Shireman, J.; Lin, P.; Dara, G.; McCortney, K.; Horbinski, C.; Sonabend, A.; Ahmed, A. U.

doi:10.1101/2021.07.28.453566

bioRxiv · 10.1101/2021.07.28.453566

CRISPR-Cas9 Screen Reveals PSMB3 Contributes to Gliomagenesis Through Proteasome-Dependent and Independent Mechanisms

Baisiwala, S.·Budhiraja, S.·Zolp, A.·Nandoliya, K.·Chen, L.·Park, C.·Perrault, E.·Saathoff, M.·Dmello, C.·Shireman, J.·Lin, P.·Dara, G.·McCortney, K.·Horbinski, C.·Sonabend, A.·Ahmed, A. U.

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Abstract

Glioblastoma (GBM) is the most common adult malignant brain tumor, with a median survival of 21 months and a 100% recurrence rate. Even though many of the critical oncogenic drivers for GBM have been identified, the basis of gliomagenesis is still under investigation. To identify novel genes that contribute to GBM progression, we performed a genome-wide CRISPR-Cas9 knockout screen. We identified four previously unstudied genes - PSMB3, CHCHD4, SPDYE5, HSPA1 - which had elevated expression in cancer and demonstrated a significant positive correlation with respect to GBM growth and patient survival in vivo and patient datasets. Furthermore, overexpression of PSMB3 and HSPA5 in neural stem cells resulted in transformation to a cancer phenotype. Further investigation of PSMB3, a subunit of the proteasome, allowed us to identify both ubiquitin-mediated and non-ubiquitin-mediated mechanisms of oncogenesis. Ultimately, the data from our CRISPR screens suggests that these genes drive tumor progression, making them promising therapeutic targets for GBM.

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Baisiwala, S., Budhiraja, S., Zolp, A., Nandoliya, K., Chen, L., Park, C., Perrault, E., Saathoff, M., Dmello, C., Shireman, J., Lin, P., Dara, G., McCortney, K., Horbinski, C., Sonabend, A., Ahmed, A. U.. 2021-07-28. CRISPR-Cas9 Screen Reveals PSMB3 Contributes to Gliomagenesis Through Proteasome-Dependent and Independent Mechanisms. https://doi.org/10.1101/2021.07.28.453566

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