bioRxiv ScienceSearch

bioRxiv · 10.1101/2021.06.09.447803

A robust field-based method to screen heat tolerance in wheat

Abstract

Wheat is highly sensitive to elevated temperatures, particularly during pollen meiosis and early-to-mid grain filling. The impact of heat stress greatly depends on the plant developmental stage. Thus, germplasm ranking for heat tolerance in field trials may be confounded by variations in developmental phase between genotypes at the time of heat events. A photoperiod-extension method (PEM) was developed allowing screening of 35 diverse genotypes at matched developmental phase despite phenological variations. Paired trials were conducted to compare the new PEM against conventional field screening in plots. In the PEM, plants were sown in single rows or small plots. Artificial lighting was installed at one end of each row or plot to extend day length, inducing a gradient of flowering times with distance from the lights. Individual stems or plot quadrats of each genotype were tagged at flowering. Late-sown plants received more heat shocks during early to mid grain filling than earlier sowings, suffering reductions in both individual grain weight (IGW) and yield. IGW was reduced by 1.5 mg for each additional post-flowering day with temperature > 30{degrees}C. Significant genotypic differences in heat tolerance ranking were observed between PEM versus conventional plot screening. Strong correlations between trials experiencing similar degree of heat were found both for IGW and for total grain weight with the PEM either with individual-stem tagging (e.g. average r of 0.59 and 0.54, respectively for environments with moderate postflowering heat) or quadrat tagging (r of 0.53 and 0.47). However, correlations for IGW and yield in these environments were either poor or negative for conventional trials (e.g. average r of 0.11 and 0.12, respectively for environments with moderate postflowering heat). Accordingly, a PCA grouped genotypes consistently for heir performance across environments with similar heat stress in PEM trials but not in conventional trials. In this study, most consistent genotype ranking for heat tolerance was achieved with the PEM with tagging and harvesting individual spikes at matched developmental phase. The PEM with quadrat sampling provided slightly less consistent rankings but appears overall more suitable for high-throughput phenotyping. The method promises to improve the efficiency of heat tolerance field screening, particularly when comparing genotypes of different maturity types.

Source connections

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Ullah, N., Christopher, J., FREDERIKS, T., Ma, S., Tan, D., Chenu, K.. 2021-06-10. A robust field-based method to screen heat tolerance in wheat. https://doi.org/10.1101/2021.06.09.447803

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

In-cell structural analysis reveals a distinctive chloroplast ribosome in Chlamydomonas reinhardtii

Chloroplast ribosomes synthesize plastid-encoded components of photosynthetic machinery, yet their structure and organization remain poorly understood. We combined cryo-focused ion beam milling, cryo-electron tomography and subtomogram averaging to determine native chloroplast ribosomes in Chlamydomonas reinhardtii. The 4.4-4.9 [A] structure revealed a large arch-like extension on the small subunit (SSU). Comparisons with bacterial and plant chloroplast ribosomes, supported by proteomics, AlphaFold3 predictions and a recent atomic model, indicate that the arch is formed by insertions and extensions in SSU proteins. Classification resolved active, thylakoid-associated ribosomes with density adjacent to the nascent peptide exit and an arch-moved state enriched among thylakoid-associated particles, with coordinated displacement of the arch and beak. Phylogenetic analysis revealed an evolutionary mosaic: the uS3c insertion is broadly distributed across Chlorophyceae, whereas the uS2c insertion, uS5c and PSRP7 are concentrated in Chlamydomonadales, with PSRP7 also in Sphaeropleales. Nuclear-encoded components were recruited stepwise onto a plastid-encoded scaffold, with all four under comparable purifying selection. These findings link a lineage-specific SSU extension to ribosome dynamics, thylakoid association and evolution, highlighting the value of in-cell structural analysis.

plant biology

Implementation and calibration of the Vaganov-Shashkin model in the virtualRings R package

Process-based tree growth models provide a mechanistic framework for investigating how climate conditions regulate tree growth across daily to annual time scales. Yet, their broader application across species and environments is constrained by the limited accessibility in open-source environments and the difficulty of estimating physiological parameters that are rarely measured directly. Here, we present virtualRings, a new R package integrating the Vaganov-Shashkin model (VSM) and the RINGS3 models, and focus on the implementation and calibration of VSM. Using tree-ring width observations from seven Northern Hemisphere sites across various environmental conditions, we compared the traditional bootstrap-based calibration approach with the Covariance Matrix Adaptation Evolution Strategy (CMA-ES). CMA-ES improved agreement between simulated and observed radial tree growth and provided an efficient approach for model parameter estimation. We further evaluated practical CMA-ES settings to balance computational cost and performance and discussed its potential limitations. The virtualRings package provides an open and reproducible platform for tree growth simulation, facilitating the application of important process-based models across species and environments and the investigation of how temperature and moisture constraints regulate daily tree-ring formation across spatial and temporal scales.

plant biology

Timing of transient darkness shapes carbon-nitrogen metabolism and sugar signaling in sugarcane

Fluctuating light is common in field environments. Yet, the mechanisms by which C4 crops coordinate carbon and nitrogen metabolism during short-term carbon deprivation remain poorly understood. Here, we imposed transient darkness at different phases of the diel cycle to assess how the timing of light loss affects photosynthesis, carbohydrate turnover, amino acid dynamics, and sugar-sensing pathways in commercial sugarcane leaves. Early-day darkness significantly impaired photosynthetic induction and revealed a temporal disconnect between stomatal and metabolic limitations, whereas midday and late-day treatments caused temporary, time-specific disruptions in carbon assimilation. These shifts altered the balance between sucrose preservation and catabolic mobilization, leading to treatment-dependent changes in starch reserves and free amino acids. Core circadian components largely maintained their phase relationships, but their amplitudes varied across treatments, consistent with partial decoupling from carbon status. Darkness also reorganized energy signaling, with SnRK1 and DIN6 responses associated with greater declines in sucrose. Notably, trehalose-pathway transcripts showed marked changes in network connectivity, with ScTPSIIG consistently emerging as a highly connected candidate associated with photosynthetic performance, water-use traits, sugar sensing, and amino acid metabolism. Overall, these results indicate that the timing of carbon limitation and residual sucrose availability shape distinct metabolic responses, while trehalose metabolism provides a candidate regulatory layer coordinating carbon-nitrogen adjustment during the diel cycle, highlighting class II TPS proteins as targets for functional investigation of metabolic resilience in sugarcane.

plant biology