Sex differences in microRNA expression in first and third trimester human placenta

Flowers, A. E.; Gonzalez, T. L.; Joshi, N. V.; Eisman, L. E.; Clark, E. L.; Buttle, R. A.; Sauro, E.; DiPentino, R.; Lin, Y.; Wu, D.; Wang, Y.; Santiskulvong, C.; Tang, J.; Lee, B.; Sun, T.; Chan, J. L.; Wang, E. T.; Jefferies, C.; Lawrenson, K.; Zhu, Y.; Afshar, Y.; Tseng, H.-R.; Williams, J.; Pisarska, M. D.

doi:10.1101/2021.05.13.444056

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bioRxiv · 10.1101/2021.05.13.444056

Sex differences in microRNA expression in first and third trimester human placenta

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Abstract

Maternal and fetal pregnancy outcomes related to placental function vary based on fetal sex, which may be the result of sexually dimorphic epigenetic regulation of RNA expression. We identified sexually dimorphic miRNA expression throughout gestation in human placentae. Next-generation sequencing was used to identify miRNA expression profiles in first and third trimester uncomplicated pregnancies using tissue obtained at chorionic villous sampling (n=113) and parturition (n=47). Sequencing and differential expression (DE) analysis identified 432 mature miRNAs expressed in the first trimester female, 425 in the first trimester male, 400 in the third trimester female, and 508 in the third trimester male placenta (baseMean >10). Of these, 11 sexually dimorphic (FDR<0.05, baseMean >10) miRNAs were identified in the first and 4 miRNAs were identified in the third trimester, including miR-361-5p, significant in both trimesters, all upregulated in females. Across gestation, 207 miRNAs were DE across gestation, common to both females and males, miR-4483, the most DE across gestation. There were twice as many female-specific differences across gestation as male-specific (44 miRNAs vs 21 miRNAs), indicating that miRNA abundance across human gestation is sexually dimorphic. Pathway enrichment analysis identified significant pathways that were differentially regulated in first and third trimester as well as across gestation. This work provides the normative sex dimorphic miRNA atlas in first and third trimester, as well as the sex independent and sex specific placenta miRNA atlas across gestation which may be used to identify biomarkers of placental function and direct functional studies investigating placental sex differences. Summary SentenceSex dimorphism in miRNA expression is more pronounced in first compared to third trimester placenta, and there are twice as many female-specific gestational differences, indicating miRNA abundance across human gestation is also sexually dimorphic.

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Flowers, A. E., Gonzalez, T. L., Joshi, N. V., Eisman, L. E., Clark, E. L., Buttle, R. A., Sauro, E., DiPentino, R., Lin, Y., Wu, D., Wang, Y., Santiskulvong, C., Tang, J., Lee, B., Sun, T., Chan, J. L., Wang, E. T., Jefferies, C., Lawrenson, K., Zhu, Y., Afshar, Y., Tseng, H.-R., Williams, J., Pisarska, M. D.. 2021-05-13. Sex differences in microRNA expression in first and third trimester human placenta. https://doi.org/10.1101/2021.05.13.444056

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