bioRxiv Science⌕ Search

bioRxiv · 10.1101/2021.05.04.442620

Hierarchical Bayesian Model for Estimating Migratory Bird Harvest in Canada

Abstract

The Canadian Wildlife Service (CWS) requires reliable estimates of the harvest of migratory game birds, including waterfowl, to effectively manage populations of these hunted species. The National Harvest Survey is an annual survey of hunters who purchase Canadas mandatory migratory game bird hunting permit, integrating information from a survey of hunting activity with information from a separate survey of species composition in the harvest. We use these survey data to estimate the number of birds harvested for each species, as well as hunting activity metrics such as the number of active hunters and days spent hunting. The analytical methods used to generate these estimates have not changed since the survey was first designed in the early 1970s. Here we describe a new hierarchical Bayesian integrated model, which replaces the series of ratio estimators that comprised the old model. We are now using this new model to generate estimates for migratory bird harvests as of the 2019-2020 hunting season, and to generate updated estimates for all earlier years. The hierarchical Bayesian model uses over-dispersed Poisson distributions to model mean hunter activity and harvest (zero inflated Poisson and zero truncated Poisson, respectively). It also includes multinomial distributions to model some key components including, variation in total harvest across periods of the hunting season, the species composition of the harvest within each of those periods, and the age and sex composition in the harvests of a given species. We estimated the parameters of the Poisson and the multinomial distributions for each year as random effects using first-difference time-series. This time-series component allows the model to share information across years and reduces the sensitivity of the estimates to annual sampling noise. The new model estimates are generally very similar to those from the old model, particularly for the species that occur most commonly in the harvest, and so the results do not suggest any major changes to harvest management decisions and regulations. However, estimates for all species from the new model are more precise and less susceptible to annual sampling error, particularly for species that occur less commonly in the harvest (e.g., sea ducks and other species of conservation concern). This new model, with its hierarchical Bayesian framework, will also facilitate future improvements and elaborations, allowing the incorporation of prior information from the rich literature and knowledge in game bird management and biology.

Source connections

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Smith, A. C., Villeneuve, T., Gendron, M.. 2021-05-05. Hierarchical Bayesian Model for Estimating Migratory Bird Harvest in Canada. https://doi.org/10.1101/2021.05.04.442620

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

A leaf-carbon economy model to explain the adaptive value of low vs. high leaf mass per area as a function of habitat productivity

Plant traits interact with environmental conditions to determine plant fitness. In particular, plant species with low leaf mass per area (LMA) are more common in high fertility soils and forest gaps, while plant species with high LMA are more common in low fertility soils and in shaded forest understories. It is not yet known why the adaptive value of LMA changes as a function of environmental productivity. We present a model for plant growth as a function of LMA and productivity. Our model relies on an empirically derived relationship between LMA and leaf lifespan. We are able to explain why species with lower LMA are successful in high productivity environments including environments with high availability of either light or soil nutrients, by showing that the LMA which maximizes growth rate decreases with increasing rate of carbon assimilation. We show that low LMA species are better at taking advantage of the 'high interest' environment of high productivity habitats by reinvesting assimilated carbon in new leaves and earning compound interest, while high LMA species grow more efficiently in the 'low interest' environment of low productivity habitats. This tradeoff sheds light on the adaptive value of LMA as it relates to environmental productivity.

ecology↗

Species differentiate water uptake depths within a narrow vertical zone in temperate grasslands

Whether and under which conditions coexisting species in temperate grasslands differentiate their water uptake within the shallow soil layer they share is central to understanding hydrological niche differentiation in these ecosystems. In this field study, we quantified water uptake depth of 28 coexisting herbaceous species across 74 temperate grassland plots in three regions of Germany using oxygen stable isotopes and soil water content measured at multiple depths. Species consistently differed in water uptake depth across all regions, consistent with hydrological niche differentiation. This differentiation was largely confined to the upper 30 cm of soil and became stronger as overall soil moisture declined, with plants accessing water at greater depths in drier plots. In contrast, the vertical distribution of soil moisture was unrelated to either uptake depth or species differentiation. Despite pronounced species level variation, broad herbaceous functional classifications, including grasses versus forbs and fibrous versus taprooted species, showed substantial overlap in water uptake depth. Together, our results show that hydrological niche differentiation in temperate grasslands is expressed through fine scale differences among species within a shared shallow soil domain, becomes more pronounced under drier conditions, and is poorly captured by broad herbaceous functional classifications.

ecology↗

Fungal-bacterial interactions enhance bacterial but constrain fungal resistance and recovery to extreme heat across soil moisture levels

Soil fungi and bacteria are key drivers of nutrient cycling and plant productivity in terrestrial ecosystems, yet their responses to climate extremes are rarely studied as interacting partners rather than in isolation. Moreover, it remains largely unknown how fungal-bacterial interactions regulate fungal and bacterial stability under climate extremes, particularly resistance (immediate responses to climate extremes) and recovery (responses after climate extremes cease). Here, we conducted a soil microcosm experiment with a bacterial species (Pseudomonas putida KT2440) paired with one of four Trichoderma species (T. hamatum, T. atroviride, T. koningiopsis, and T. harzianum). These fungal-bacterial pairs were then exposed to a 5-day heat event (40 {degrees}C/32 {degrees}C, day/night) followed by a 14-day recovery period (25 {degrees}C/17 {degrees}C, day/night), at two soil moisture levels (30% and 5% gravimetric water content). Our results show that fungal-bacterial interactions asymmetrically affect fungal and bacterial responses to extreme heat. Trichoderma species facilitated the resistance and recovery of P. putida density (CFUs) to extreme heat, whereas P. putida constrained the resistance and recovery of fungal biomass (ergosterol) to extreme heat, regardless of soil moisture conditions. Moreover, faster-growing Trichoderma species were associated with greater facilitation of bacterial resistance and recovery. Bacterial density also covaried positively with fungal biomass during heat stress under both soil moisture conditions, suggesting that net fungal facilitation enhances bacterial persistence under extreme heat. Together, our findings reveal that fungal-bacterial interactions can stabilize one microbial partner while increasing the vulnerability of the other, highlighting the contrasting consequences of biotic interactions under climate extremes.

ecology↗