Machine-Perception Nanosensor Platform to Detect Cancer Biomarkers

Yaari, Z.; Yang, Y.; Apfelbaum, E.; Settle, A.; Cullen, Q.; Cai, W.; Long Roche, K.; Levine, D. A.; Fleisher, M.; Ramanathan, L.; Zheng, M.; Jagota, A.; Heller, D. A.

doi:10.1101/2021.04.28.441499

bioRxiv · 10.1101/2021.04.28.441499

Machine-Perception Nanosensor Platform to Detect Cancer Biomarkers

Yaari, Z.·Yang, Y.·Apfelbaum, E.·Settle, A.·Cullen, Q.·Cai, W.·Long Roche, K.·Levine, D. A.·Fleisher, M.·Ramanathan, L.·Zheng, M.·Jagota, A.·Heller, D. A.

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Abstract

Conventional molecular recognition elements, such as antibodies, present issues for the development of biomolecular assays for use in point-of-care devices, implantable/wearables, and under-resourced settings. Additionally, antibody development and use, especially for highly multiplexed applications, can be slow and costly. We developed a perception-based platform based on an optical nanosensor array that leverages machine learning algorithms to detect multiple protein biomarkers in biofluids. We demonstrated this platform in gynecologic cancers, which are often diagnosed at advanced stages, leading to low survival rates. We investigated the platform for detection in uterine lavage samples, which are enriched with cancer biomarkers compared to blood. We found that the method enables the simultaneous detection of multiple biomarkers in patient samples, with F1-scores of ~0.95 in uterine lavage samples from cancer patients. This work demonstrates the potential of perception-based systems for the development of multiplexed sensors of disease biomarkers without the need for specific molecular recognition elements.

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Yaari, Z., Yang, Y., Apfelbaum, E., Settle, A., Cullen, Q., Cai, W., Long Roche, K., Levine, D. A., Fleisher, M., Ramanathan, L., Zheng, M., Jagota, A., Heller, D. A.. 2021-04-29. Machine-Perception Nanosensor Platform to Detect Cancer Biomarkers. https://doi.org/10.1101/2021.04.28.441499

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