Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space (AnVIL)

Schatz, M. C.; Philippakis, A. A.; Afgan, E.; Banks, E.; Carey, V. J.; Carroll, R. J.; Culotti, A.; Ellrott, K.; Goecks, J.; Grossman, R. L.; Hall, I.; Hansen, K. D.; Lawson, J.; Leek, J. T.; O'Donnell Luria, A.; Mosher, S.; Morgan, M.; Nekrutenko, A.; O'Connor, B. D.; Osborn, K.; Paten, B.; Patterson, C.; Tan, F. J.; Overby Taylor, C.; Vessio, J.; Waldron, L. D.; Wang, T.; Wuichet, K.; AnVIL Team,

doi:10.1101/2021.04.22.436044

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bioRxiv · 10.1101/2021.04.22.436044

Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space (AnVIL)

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Abstract

The traditional model of genomic data analysis - downloading data from centralized warehouses for analysis with local computing resources - is increasingly unsustainable. Not only are transfers slow and cost prohibitive, but this approach also leads to redundant and siloed compute infrastructure that makes it difficult to ensure security and compliance of protected data. The NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space (AnVIL; https://anvilproject.org) inverts this model, providing a unified cloud computing environment for data storage, management, and analysis. AnVIL eliminates the need for data movement, allows for active threat detection and monitoring, and provides scalable, shared computing resources that can be acquired by researchers as needed. This presents many new opportunities for collaboration and data sharing that will ultimately lead to scientific discoveries at scales not previously possible.

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Schatz, M. C., Philippakis, A. A., Afgan, E., Banks, E., Carey, V. J., Carroll, R. J., Culotti, A., Ellrott, K., Goecks, J., Grossman, R. L., Hall, I., Hansen, K. D., Lawson, J., Leek, J. T., O'Donnell Luria, A., Mosher, S., Morgan, M., Nekrutenko, A., O'Connor, B. D., Osborn, K., Paten, B., Patterson, C., Tan, F. J., Overby Taylor, C., Vessio, J., Waldron, L. D., Wang, T., Wuichet, K., AnVIL Team,. 2021-04-23. Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space (AnVIL). https://doi.org/10.1101/2021.04.22.436044

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