bioRxiv ScienceSearch

bioRxiv · 10.1101/2021.03.18.436039

Analysis of correlation and trail coefficients for componentperformance s in nine experimental tomato lines

Abstract

The objective of the research was to analyze the main variables related to tomato yield, and guide the selection of materials for the INIAF vegetable improvement program. The experiment was carried out in the open field using nine tomato lines on the grounds of the National Vegetable Seed Production Center, during the 2017-2018 agricultural campaign. A randomized complete block experimental design was used, with three repetitions and 10 plants per experimental unit. For the analysis of the data, the variable yield was considered as dependent and the variables number of flowers per inflorescence, number of clusters per plant, number of fruits per plant, weight of fruit, equatorial and polar diameter as independent variables. Analysis of variance, phenotypic correlations and path coefficients were performed. The performance of the L015 line was 80. 79 t ha-1 higher than the L014, L019 and Rio Grande lines. The fruit yield had a significant correlation with the weight of fruit per plant followed by the polar diameter, equatorial diameter, number of fruits per plant and weight of fruit. The analysis of path coefficients showed that the number of fruits per plant had the highest direct positive effect on the fruit yield, fruit weight and equatorial diameter that have a significant correlation and a direct effect on the fruit yield, emerged as the components with coefficients of 0.96 and 0.52 respectively. These characters may be relevant within the selection criteria in the development of new varieties. number of fruits per plant and weight of fruit. The analysis of path coefficients showed that the number of fruits per plant had the highest direct positive effect on the fruit yield, fruit weight and equatorial diameter that have a significant correlation and a direct effect on the fruit yield, emerged as the components with coefficients of 0.96 and 0.52 respectively. These characters may be relevant within the selection criteria in the development of new varieties. number of fruits per plant and weight of fruit. The analysis of path coefficients showed that the number of fruits per plant had the highest direct positive effect on the fruit yield, fruit weight and equatorial diameter that have a significant correlation and a direct effect on the fruit yield, emerged as the components with coefficients of 0.96 and 0.52 respectively. These characters may be relevant within the selection criteria in the development of new varieties.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

QUISPE CHOQUE, G.. 2021-03-20. Analysis of correlation and trail coefficients for componentperformance s in nine experimental tomato lines. https://doi.org/10.1101/2021.03.18.436039

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

The histone demethylase Kdm5 and the ARGONAUTE proteins Piwi and Aubergine regulate female abdominal pigmentation in Drosophila melanogaster

Insect pigmentation is an ecologically critical trait influencing many physiological processes. In Drosophila melanogaster, abdominal pigmentation is sexually dimorphic: males have fully pigmented posterior segments, while females exhibit a posterior melanin stripe. Pigmentation relies on the expression of pigmentation genes that encode enzymes involved in pigment synthesis. These genes are tightly regulated during pupal and young adult stages. To expand the gene regulatory network of pigmentation genes, we conducted an RNAi screen using the yellow-Gal4 driver, expressed during the pupal stage in abdominal epidermis. One of the candidates from this screen, Kdm5, encodes a histone demethylase erasing the H3K4me3 histone mark catalyzed by the histone methyl-transferase Trithorax (Trx). We show that Kdm5 down-regulation reduces abdominal pigmentation, mimicking trx down-regulation. Kdm5 activates melanin production through regulation of the pigmentation gene tan. Transcriptomic analyses reveal that Kdm5 and Trx share many targets in pupal abdominal epidermis, including piRNA pathway components such as piwi and aubergine. These piRNA components, originally associated with transposon silencing in the germline, also function in some somatic tissues such as the nervous system, the fat body or the gut. We demonstrate that Piwi and Aubergine participate in female abdominal pigmentation establishment, without evident piRNA production. We also show that Kdm5 and Piwi act not only in pupal abdominal epidermis but also in pupal fat body. This study therefore expands the regulatory network of pigmentation genes. It identifies a new somatic function for Kdm5 and Piwi and reveals a role for pupal fat body in female abdominal pigmentation regulation.

genetics

Genetic diversity within and between polyploid sugarcane (Saccharum spp.) families obtained via caryopsis using microsatellite markers and multicategory model

Genetic diversity analyses are essential for sugarcane (Saccharum spp.) breeding programs. Crossbreeding, based on genetic distances between parental plants, is a tool used to increase genetic variability and enhance plant selection; however, quantifying variation in highly polyploid species remains a challenge. The present study aimed to evaluate the diversity within and between 12 families of sugarcane derived from caryopses, analyzing 120 individual seedlings arranged in an augmented block design. Genotyping was performed using primers for 16 microsatellite loci, five simple sequence repeat (SSR) loci, and 11 expressed sequence tag-SSR (EST-SSR) loci. To accurately account for polyploidy, similarity calculations were performed using Bruvos distances among individuals and RST distances among the families. Analysis of molecular variance (AMOVA) indicated that most of the genetic variability was within families (72%), with only 28% found between them. This high level of intra-family variation demonstrates that a significant reservoir of genetic diversity remains available within the crosses. The highest genetic similarity was observed between the families RB986952 x RB986960 and RB036122 x RB03611, whereas the lowest genetic similarity was observed between the families RB97319 x RB966928 and RB106802 x RB855036. Although the evaluated families shared high genetic similarity, the pronounced genetic variation within them demonstrates a robust recombination potential, indicating that the genetic basis of sugarcane can be better explored using the high variability that already exists in the selection of desirable morpho-agronomic characteristics within the families. Furthermore, this study highlights the importance of using appropriate distances for diversity studies with codominant markers, such as microsatellites, in polyploid species.

genetics

Optimizing DNA extraction from environmentally degraded bone samples for molecular identification of cetacean species

Molecular identification of cetacean bone remains can be limited by DNA degradation and the presence of PCR inhibitors. Here, we present an optimized DNA extraction protocol based on a total demineralization method for environmentally exposed cetacean bones. The protocol uses 100 mg of bone powder, 24 h digestion with EDTA, N-lauroylsarcosine, and proteinase K, followed by a modified silica-column purification. Nine environmentally degraded bone samples representing eight individuals were processed. DNA concentrations ranged from 7.3 to 57.1 ng/uL (mean SD = 25.91- 13.91 ng/uL). The mitochondrial cytochrome b gene was successfully amplified from all samples using conventional PCR, and five samples (55.6%) yielded sequences suitable for downstream analysis. BLASTn identified Balaenoptera physalus as the closest database match for all recovered sequences, and phylogenetic analysis further supported their association with B. physalus reference sequences. These results demonstrate that the proposed protocol provides a practical approach for recovering amplifiable and molecularly informative mitochondrial DNA from environmentally degraded cetacean bone material, facilitating molecular identification from challenging skeletal remains.

genetics