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bioRxiv · 10.1101/2021.01.11.426045

Characterizing scaling laws in gut microbial dynamics from time series data: caution is warranted

Wang, X.-W.·Liu, Y.-Y.
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Abstract

Many studies have revealed that both host and environmental factors can impact the gut microbial compositions, implying that the gut microbiota is considerably dynamic1-5. In their Article, Ji et al.6 performed comprehensive analysis of multiple high-resolution time series data of human and mouse gut microbiota. They found that both human and mouse gut microbiota dynamics can be characterized by several robust scaling laws describing short- and long-term changes in gut microbiota abundances, distributions of species residence and return times, and the correlation between the mean and the temporal variance of species abundances. They claimed that those scaling laws characterize both short- and long-term dynamics of gut microbiota. However, we are concerned that their interpretation is quite misleading, because all the scaling laws can be reproduced by the shuffled time series with completely randomized time stamps of the microbiome samples.

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Wang, X.-W., Liu, Y.-Y.. 2021-01-12. Characterizing scaling laws in gut microbial dynamics from time series data: caution is warranted. https://doi.org/10.1101/2021.01.11.426045

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