Acquired RAD51C promoter methylation loss causes PARP inhibitor resistance in high grade serous ovarian carcinoma

Nesic, K.; Kondrashova, O.; Hurley, R. M.; McGehee, C.; Vandenberg, C. J.; Ho, G.-Y.; Lieschke, E.; Dall, G.; Bound, N.; Shield-Artin, K.; Radke, M. R.; Musafer, A.; Qing Chai, Z.; Harrell, M. I.; Kee, D.; Olesen, I.; McNally, O.; Traficante, N.; DeFazio, A.; Bowtell, D.; Swisher, E. M.; Weroha, J.; Nones, K.; Waddell, N.; Kaufmann, S. H.; Dobrovic, A.; Wakefield, M. J.; Scott, C. L.

doi:10.1101/2020.12.10.419176

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bioRxiv · 10.1101/2020.12.10.419176

Acquired RAD51C promoter methylation loss causes PARP inhibitor resistance in high grade serous ovarian carcinoma

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Abstract

While loss of BRCA1 promoter methylation has been shown to cause PARP inhibitor (PARPi) resistance in high-grade serous ovarian carcinoma (HGSC), the impacts of RAD51C methylation (meRAD51C) remain unresolved. In this study, three PARPi-responsive HGSC patient-derived xenografts (PDX) with RAD51C gene silencing and homologous recombination deficiency were found to have either homogeneous or heterogeneous patterns of meRAD51C. PDX could lose meRAD51C following PARPi treatment (rucaparib/niraparib), where a single unmethylated RAD51C copy was sufficient to drive PARPi-resistance. Genomic profiling revealed this resistance was acquired independently in two distinct PDX lineages. Furthermore, we describe a patient sample where 1/3 RAD51C gene copies lost methylation following neoadjuvant chemotherapy. We show meRAD51C is a positive predictive biomarker for PARPi response and should be screened for routinely in patients. However, methylation loss in a single gene copy is sufficient to cause PARPi resistance and should be carefully assessed in previously treated patients considering PARPi therapy.

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Nesic, K., Kondrashova, O., Hurley, R. M., McGehee, C., Vandenberg, C. J., Ho, G.-Y., Lieschke, E., Dall, G., Bound, N., Shield-Artin, K., Radke, M. R., Musafer, A., Qing Chai, Z., Harrell, M. I., Kee, D., Olesen, I., McNally, O., Traficante, N., DeFazio, A., Bowtell, D., Swisher, E. M., Weroha, J., Nones, K., Waddell, N., Kaufmann, S. H., Dobrovic, A., Wakefield, M. J., Scott, C. L.. 2020-12-11. Acquired RAD51C promoter methylation loss causes PARP inhibitor resistance in high grade serous ovarian carcinoma. https://doi.org/10.1101/2020.12.10.419176

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