An experimental assessment of the distribution of environmental DNA along the water column

Agostinis, A. O.; Dal Pont, G.; Borio, A.; Horodesky, A.; Bertao, A. P. S.; Netto, O. S. M.; Zanin, T. L.; Ostrensky, A.; Pie, M. R.

doi:10.1101/2020.11.30.402438

bioRxiv · 10.1101/2020.11.30.402438

An experimental assessment of the distribution of environmental DNA along the water column

Agostinis, A. O.·Dal Pont, G.·Borio, A.·Horodesky, A.·Bertao, A. P. S.·Netto, O. S. M.·Zanin, T. L.·Ostrensky, A.·Pie, M. R.

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Abstract

The study of environmental DNA (eDNA) is increasingly becoming a valuable tool to survey and monitor aquatic communities. However, there are important gaps in our understanding of the dynamics governing the distribution of eDNA under natural conditions. In this report we carry out controlled experiments to assess the extent and timing of eDNA distribution along the water column. A sample of known eDNA concentration was placed at the bottom of a 5-m high tube (20 cm in diameter and total volume of 160 L), and water samples were obtained at different depths over an 8 h-period. The presence of the target eDNA was assessed by qPCR analysis. This sampling protocol allowed for assessing the timescale for the diffusion of eDNA while minimizing the influence of turbulence. We demonstrate that, after a time-period of as little as 30 min, the eDNA had spread across the entire container. The implications of these results for eDNA sampling protocols in the field are discussed.

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Agostinis, A. O., Dal Pont, G., Borio, A., Horodesky, A., Bertao, A. P. S., Netto, O. S. M., Zanin, T. L., Ostrensky, A., Pie, M. R.. 2020-12-01. An experimental assessment of the distribution of environmental DNA along the water column. https://doi.org/10.1101/2020.11.30.402438

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