bioRxiv Science⌕ Search

bioRxiv · 10.1101/2020.11.27.401851

Data-driven beamforming techniques to attenuate ballistocardiogram (BCG) artefacts in EEG-fMRI without detecting cardiac pulses in electrocardiography (ECG) recordings

Abstract

Simultaneous recording of EEG and fMRI is a very promising non-invasive neuroimaging technique, providing a wide range of complementary information to characterize underlying mechanisms associated with brain functions. However, EEG data obtained from the simultaneous EEG-fMRI recordings are strongly influenced by MRI related artefacts, namely gradient artefacts (GA) and ballistocardiogram (BCG) artefacts. The GA is induced by temporally varying magnetic field gradients used for MR imaging, whereas the BCG artefacts are produced by cardiac pulse driven head motion in the strong magnetic field of the MRI scanner, so that this BCG artefact will be present when the subject is lying in the scanner, even when no fMRI data are acquired. When compared to corrections of the GA, the BCG artefact corrections are more challenging to remove due to its inherent variabilities and dynamic changes over time. Typically, the BCG artefacts obscure the EEG signals below 20Hz, and this remains problematic especially when the frequency of interest of EEG signals is below 20Hz, such as Alpha (8-13Hz) and Beta (13-30Hz) band EEG activity, or sleep spindle (11-16Hz) and slow-wave oscillations (<1 Hz) during sleep. The standard BCG artefact corrections, as for instance Average Artefact Subtraction method (AAS), require detecting cardiac pulse (R-peak) events from simultaneous electrocardiography (ECG) recordings. However, ECG signals in the MRI scanner are sometimes distorted and will become problematic for detecting reliable R-peaks. In this study, we focused on a beamforming technique, which is a spatial filtering technique to reject sources of signal variance that do not appear dipolar in the source space. This technique attenuates all unwanted source activities outside of a presumed region of interest without having to specify the location or the configuration of these underlying source signals. Specifically, in this study, we revisited the advantages of the beamforming technique to attenuate the BCG artefact in EEG-fMRI, and also to recover meaningful task-based induced neural signals during an attentional network task (ANT) which required participants to identify visual cues and respond as accurately and quickly as possible. We analysed EEG-fMRI data in 20 healthy participants when they were performing the ANT, and compared four different BCG correction approaches (non-BCG corrected, AAS BCG corrected, beamforming+AAS BCG corrected, beamforming BCG corrected). We demonstrated that beamforming BCG corrected data did not only significantly reduce the BCG artefacts, but also significantly recovered the expected task-based induced brain activity when compared to the standard AAS BCG corrections. Without detecting R-peak events from the ECG, this data-driven beamforming technique appears promising especially for longer data acquisition of sleep and resting EEG-fMRI. Our findings extend previous work regarding the recovery of meaningful EEG signals by an optimized suppression of MRI related artefacts. HighlightsO_LIBeamforming spatial filtering technique attenuates ballistocardiogram (BCG) artefacts in EEG-fMRI without detecting cardiac pulses in electrocardiography (ECG) recordings. C_LIO_LIBeamforming BCG denoising technique recovers expected task-based induced visual alpha and motor beta event-related desynchronization (ERD). C_LIO_LIBeamforming technique improves signal-noise ratios (SNR) of neural activities as compared to sensor level signals. C_LIO_LIData-driven beamforming technique appears promising for longer data acquisition of sleep and resting EEG-fMRI without relying on ECG signals. C_LI

Source connections

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Uji, M., Cross, N., Pomares, F. B., Lina, J.-M., Dang-Vu, T. T., Grova, C.. 2020-11-27. Data-driven beamforming techniques to attenuate ballistocardiogram (BCG) artefacts in EEG-fMRI without detecting cardiac pulses in electrocardiography (ECG) recordings. https://doi.org/10.1101/2020.11.27.401851

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

CoReg, tracking-based motion compensation for in vivo calcium imaging

In vivo calcium imaging enables the observation of neural activity with high spatial and temporal resolution. However, recordings are frequently affected by motion artifacts caused by animal movement, physiological processes, tissue drift, or instability of the imaging setup. These artifacts make signal extraction harder and reduce the consistency of downstream analyses. Current registration methods can correct rigid and non-rigid motion, but often estimate motion from individual frames or image patches and make limited use of temporal information. In addition, activity-driven fluorescence changes can make it difficult to distinguish changes in image appearance from actual motion. Here, we treat motion correction in calcium imaging as a point tracking problem and introduce CoReg, an open-source Python- based software tool with a graphical user interface. We benchmark CoReg against established registration methods using fluorescence imaging datasets from multiple species. CoReg performs competitively with or better than existing approaches across several settings. We further show that its performance is robust to the choice of tracked points, making the method straightforward to apply. CoReg includes implementations of both our method and the evaluated established methods. Our results show that tracking-based registration provides a simple and reliable approach for motion correction in vivo calcium imaging.

neuroscience↗

A shared slowing axis and phenotype-specific rhythms link clinical EEG to FDG-PET dementia phenotypes

Early and accurate identification of neurodegenerative disorders has notable implications for treatment and quality of life. Whereas neuroimaging-based biomarkers can accurately identify neurodegenerative subtypes, EEG represents a low-cost alternative that could expand access to dementia care. Here, we investigated whether six data-driven EEG latent factors, derived by nonnegative tensor decomposition of clinical EEGs, differ systematically across FDG-PET-defined neurodegenerative phenotypes. In 455 patients with EEG and FDG-PET acquired within one year of each other, factor expression was compared across 14 diagnostic classes assigned by StateViewer, a validated artificial intelligence framework for FDG-PET interpretation. To separate disease-general severity from phenotype-specific topography, each factor was also regressed on a subject-level slowing index. Finally, we related the factors to regional FDG uptake and to neuropsychological performance (n = 98) and assessed their potential utility for single-subject classification. Four factors reflecting neurophysiological oscillations (posterior alpha, Rolandic beta, frontotemporal delta-theta and posterior theta-slow alpha) varied significantly across phenotypes, with attenuation of faster and augmentation of slower rhythms most pronounced in dementia with Lewy bodies (DLB), dysexecutive Alzheimer disease (AD) and posterior cortical atrophy, whereas factors dominated by eye-movement and muscle artifact showed no robust phenotypic association. Alpha and beta effects were largely attributable to overall slowing, whereas posterior theta-slow alpha became more phenotype-specific after adjustment (eta-squared 0.082 to 0.147), dissociating the Alzheimer disease spectrum from frontotemporal syndromes. The slowing index tracked with an FDG-PET pattern highly associated with DLB across the cohort, irrespective of assigned phenotype (r = 0.51, P < 0.001). Consistent with a model in which dementia phenotypes reflect altered hippocampal-neocortical oscillatory coupling (stochastic latent oscillatory diffusion), frontotemporal delta-theta tracked a limbocortical axis of metabolic pattern expression, rising with neocortical and falling with limbic-predominant involvement, independent of overall slowing and phenotype. Each factor mapped onto a distinct metabolic topography, with frontotemporal delta-theta resembling Alzheimer-type hypometabolism and posterior theta-slow alpha the medial occipital hypometabolism of DLB. In terms of neuropsychological performance, Rolandic beta was associated with executive functions, and frontotemporal delta-theta with memory, visuospatial and global performance. Using these four factors alone, an exploratory logistic regression classifier separated cognitively unimpaired participants from DLB, posterior cortical atrophy, typical AD, and dysexecutive AD (area under the curve > 0.8) but poorly discriminated frontotemporal dementia phenotypes canonically associated with 4-repeat tau. Thus, data-driven decomposition of clinical EEG separates oscillatory activity from artifact into factors that track metabolic phenotype, regional metabolism and cognition, capturing both overall slowing and phenotype-specific patterns. This work informs the further development of scalable, biology-informed EEG-based phenotyping of neurodegenerative disease.

neuroscience↗

An application of fNIRS for the prediction of hearing thresholds in sleeping infants: a proof of principle

This study applied a two-component-response modelling approach to fNIRS recordings obtained from naturally sleeping infants presented with auditory stimuli at different sound intensities. We investigated whether the relationship between fNIRS response measures and stimulus intensity could be modelled to estimate individual auditory hearing thresholds. In the normal-hearing group, 75% of infants had threshold estimates for the sound /ba/ within the expected normal-hearing range, with an estimated mean equivalent normal loudness (ENL) of 10.72 dB HL (SD 8.64 dB HL). A case study further explored the potential application of this approach in an infant with hearing impairment, highlighting the importance of reliable responses at lower stimulus intensities and appropriate regression model selection. These findings provide preliminary evidence that cortical haemodynamic responses can be quantitatively related to sound intensity for estimating auditory sensitivity.

neuroscience↗