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bioRxiv · 10.1101/2020.11.09.374579

ProteoMill: Efficient network-based functional analysis portal for proteomics data

Ryden, M. P. E.·Englund, M.·Ali, N.
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Abstract

Functional analysis has become a common approach to incorporate biological knowledge into the analysis of omics data, and to explore molecular events that govern a disease state. It is though only one step in a wider analytical pipeline that typically requires use of multiple individual analysis software. There is currently a need for a well-integrated omics analysis tool that performs all the steps. The ProteoMill portal is developed as an R Shiny application and integrates all necessary steps from data-upload, converting identifiers, to quality control, differential expression and network-based functional analysis into a single fast, interactive easy to use workflow. Further, it maintains annotation data sources up to date, overcoming a common problem with use of outdated information, and seamlessly integrates multiple R-packages for an improved user-experience. The functionality provided in this software can benefit researchers by facilitating the exploratory analysis of proteomics data. ProteoMill is available for free at https://proteomill.com.

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Ryden, M. P. E., Englund, M., Ali, N.. 2020-11-10. ProteoMill: Efficient network-based functional analysis portal for proteomics data. https://doi.org/10.1101/2020.11.09.374579

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