Tricarboxylic acid cycle and proton gradient in Pandoravirus massiliensis: Is it still a virus?

Aherfi, S.; BRAHIM BELHAOUARI, D.; Pinault, L.; Baudoin, J.-P.; Decloquement, P.; Abrahao, J.; Colson, P.; LEVASSEUR, A.; Lamb, D. C.; Chabriere, E.; Raoult, D.; LA SCOLA, B.

doi:10.1101/2020.09.21.306415

bioRxiv · 10.1101/2020.09.21.306415

Tricarboxylic acid cycle and proton gradient in Pandoravirus massiliensis: Is it still a virus?

Aherfi, S.·BRAHIM BELHAOUARI, D.·Pinault, L.·Baudoin, J.-P.·Decloquement, P.·Abrahao, J.·Colson, P.·LEVASSEUR, A.·Lamb, D. C.·Chabriere, E.·Raoult, D.·LA SCOLA, B.

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Abstract

Since the discovery of Acanthamoeba polyphaga Mimivirus, the first giant virus of amoeba, the historical hallmarks defining a virus have been challenged. Giant virion sizes can reach up to 2.3 {micro}m, making them visible by optical microscopy. They have large genomes of up to 2.5 Mb that encode proteins involved in the translation apparatus. Herein, we investigated possible energy production in Pandoravirus massiliensis, the largest of our giant virus collection. MitoTracker and TMRM mitochondrial membrane markers allowed for the detection of a membrane potential in virions that could be abolished by the use of the depolarizing agent CCCP. An attempt to identify enzymes involved in energy metabolism revealed that 8 predicted proteins of P. massiliensis exhibited low sequence identities with defined proteins involved in the universal tricarboxylic acid cycle (acetyl Co-A synthase; citrate synthase; aconitase; isocitrate dehydrogenase; -ketoglutarate decarboxylase; succinate dehydrogenase; fumarase). All 8 viral predicted ORFs were transcribed together during viral replication, mainly at the end of the replication cycle. Two of these proteins were detected in mature viral particles by proteomics. The product of the ORF132, a predicted protein of P. massiliensis, cloned and expressed in Escherichia coli, provided a functional isocitrate dehydrogenase, a key enzyme of the tricarboxylic acid cycle, which converts isocitrate to -ketoglutarate. We observed that membrane potential was enhanced by low concentrations of Acetyl-CoA, a regulator of the tricarboxylic acid cycle. Our findings show for the first time that energy production can occur in viruses, namely, pandoraviruses, and the involved enzymes are related to tricarboxylic acid cycle enzymes. The presence of a proton gradient in P. massiliensis coupled with the observation of genes of the tricarboxylic acid cycle make this virus a form a life for which it is legitimate to question what is a virus?.

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Aherfi, S., BRAHIM BELHAOUARI, D., Pinault, L., Baudoin, J.-P., Decloquement, P., Abrahao, J., Colson, P., LEVASSEUR, A., Lamb, D. C., Chabriere, E., Raoult, D., LA SCOLA, B.. 2020-09-21. Tricarboxylic acid cycle and proton gradient in Pandoravirus massiliensis: Is it still a virus?. https://doi.org/10.1101/2020.09.21.306415

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