bioRxiv Science⌕ Search

bioRxiv · 10.1101/2020.08.24.263962

Solving musculoskeletal biomechanics with machine learning

Abstract

Deep learning is a relatively new computational technique for the description of the musculoskeletal dynamics. The experimental relationships of muscle geometry in different postures are the high-dimensional spatial transformations that can be approximated by relatively simple functions, which opens the opportunity for machine learning applications. In this study, we challenged general machine learning algorithms with the problem of approximating the posture-dependent moment arm and muscle length relationships of the human arm and hand muscles. We used two types of algorithms, light gradient boosting machine (LGB) and fully connected artificial neural network (ANN) solving the wrapping kinematics of 33 muscles spanning up to six degrees of freedom (DOF) each for the arm and hand model with 18 DOFs. The input-output training and testing datasets were generated by our previous phenomenological model based on the autogenerated polynomial structures (Sobinov et al., 2019). Both models achieved a similar level of errors: ANN model errors were 0.08{+/-}0.05% for muscle lengths and 0.53{+/-}0.29% for moment arms, and LGB model made similar errors--0.18{+/-}0.06% and 0.13{+/-}0.07%, respectively. LGB model reached the training goal with only 10^3 samples, while ANN required 10^6 samples; however, LGB models were about 39 slower than ANN models in the evaluation. The sufficient performance of developed models demonstrates the future applicability of machine learning for musculoskeletal transformations in a variety of applications, such as in advanced powered prosthetics. Author SummaryThe accurate decoding of arm and hand motor intent from biological signals remains a key challenge. Solving this task with machine learning requires vast posture- and task-dependent data for identifying structural and functional parameters within dynamic musculoskeletal relationships. This problem is related to the curse of dimensionality where the processing complexity grows exponentially with the number of degrees of freedom described by the model. Here, we developed a tool based on artificial neural networks (ANN) to solve the kinematic transformation from posture to muscle path length and muscle moment arms. We used an accurate model of posture-dependent muscle moment arms and length to train and test the ability of ANN to solve this high-dimensional and computationally intense transformation and compare it to the boosted decision tree approach. We demonstrated that model-driven training is an efficient method to handle the encoding of high-dimensional musculoskeletal relationships. Adding muscles to the transformation, which increases the input-output complexity, does not reduce the prediction accuracy and does not require the increase in the number of elements within the network demonstrating the viability of this approach for applications using musculoskeletal biomechanics.

Source connections

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Smirnov, Y., Smirnov, D., Popov, A., Yakovenko, S.. 2020-08-24. Solving musculoskeletal biomechanics with machine learning. https://doi.org/10.1101/2020.08.24.263962

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

Same Movements, Different Skills: How Context Shapes Learning in Humans and Neural Networks

What determines whether experiences are integrated into shared representations or split? Motor skill learning offers a revealing test: when two tasks require an identical sequence of movements, both intuition and theory suggest that practice in one should generalize to the other. Yet we find that changing context can make identical movements different skills. In simple recurrent networks trained on the same sequence across contexts, splitting was greatest when strong contextual inputs coincided with a high initial weight scale; neither alone sufficed. Greater representational separation coincided with separate context-specific learning curves. Humans practicing the same finger sequence while alternating between two performance-irrelevant contexts likewise exhibited context-specific curves, rather than the single continuous trajectory observed when practicing in a single context. State-space modeling favored split learning states in humans and very weakly coupled states in the most context-dependent networks. These findings have broader implications for understanding how learning generalizes across contexts.

neuroscience↗

Postpartum resource scarcity reshapes maternal care, offspring prioritization, and the steroid-sensitive medial preoptic area

Parental care requires balancing offspring needs with environmental constraints, yet how resource scarcity alters the organization of maternal responses remains poorly understood. Here, we examined maternal behavior, offspring prioritization, and steroid receptor-associated extracellular matrix organization in postpartum rats exposed to limited bedding and nesting (LBN) or control conditions with ample nesting materials. LBN increased pup-directed and reduced self-directed behaviors but also increased behavioral entropy, a measure of behavioral fragmentation, indicating less predictable caregiving sequences. LBN dams preferentially retrieved male pups first, whereas control dams preferentially retrieved females first. LBN also increased the proportion of pup-investigation time directed toward males compared with controls. In offspring on postnatal day 10, corticosterone was elevated in female but not male LBN pups, a pattern that paralleled the maternal male bias. To identify associated neurobiological changes, we assessed steroid receptors and extracellular matrix organization in the medial preoptic area (mPOA), a key region for maternal behavior. LBN increased numbers of estrogen receptor (ER)- and androgen receptor (AR)-immunoreactive cells, reduced perineuronal net (PNN) abundance, and decreased receptor-positive cell enwrapment. Because PNNs constrain structural plasticity, these findings suggest that the postpartum environment alters the organization of steroid receptor-associated extracellular matrix, potentially modulating experience-dependent plasticity in neurosteroid-sensitive circuits. In sum, LBN increases the levels of maternal engagement while reshaping its temporal organization and allocation, accompanied by selective remodeling of steroid-sensitive preoptic architecture. Therefore, maternal adaptation to adversity may be better understood as changes in caregiving allocation strategies rather than a simple gain or loss of maternal care.

neuroscience↗

The Computational Grammar of Human Behaviour in a Biological Environment

Human behaviour unfolds as an extended stream of spontaneous actions shaped by environmental demands and the agent's goals. The organisation of these actions, situated between setting abstract goals and concrete movement execution, remains poorly characterised. Here, we introduce DynaClade, an unsupervised temporal action segmentation algorithm for human full-body motion capture data, and apply it to freely moving participants navigating ecologically realistic risky foraging environments in virtual reality. DynaClade identifies discrete actions whose kinematic characteristics and spatial distributions correspond to environmental affordances, supporting the validity of the approach. Among these actions, we discovered a hitherto undescribed movement pattern defined by increased body sway without locomotion. Action sequences were highly non-random and showed clear history dependence beyond first-order Markov structure, most of which was explained by a second-order prediction. This higher-order structure was well captured in a hidden Markov model, in which some of the observed actions were associated with more than one latent state. Each of these latent states corresponded to the same action in a distinct action context. These findings suggest that spontaneous human actions are predominantly selected based on the current action and context, rather than following pre-planned or habitually assembled sequences.

neuroscience↗