bioRxiv ScienceSearch

bioRxiv · 10.1101/2020.07.10.196238

Phylogeny and biogeography of Ceiba Mill. (Malvaceae, Bombacoideae)

Abstract

The Neotropics is the most species-rich area in the world and the mechanisms that generated and maintain its biodiversity are still debated. This paper contributes to the debate by investigating the evolutionary and biogeographic history of the genus Ceiba Mill. (Malvaceae: Bombacoideae). Ceiba comprises 18 mostly neotropical species endemic to two major biomes, seasonally dry tropical forests (SDTFs) and rain forests and its species are one of the most characteristic elements of neotropical SDTF, one of the most threatened biomes in the tropics. Phylogenetic analyses of DNA sequence data from the nuclear ribosomal internal transcribed spacers (ITS) for 30 accessions representing 14 species of Ceiba recovered the genus as monophyletic and showed geographical and ecological structure in three main clades: (i) a rain forest lineage of nine accessions of C. pentandra sister to the remaining species; (ii) a highly supported clade composed of C. schottii and C. aesculifolia from Central American and Mexican SDTF plus two accessions of C. samauma from inter Andean valleys from Peru; and (iii) a highly supported South American SDTF clade including 10 species showing little sequence variation. Within this South American clade, no species represented by multiple accessions were resolved as monophyletic. We demonstrate that the patterns of species age, monophyly and geographical structure previously reported for SDTF species within the Leguminosae family are not shared by Ceiba, suggesting that further phylogenetic studies of unrelated groups are required. HIGHLIGHTSO_LIThis paper provides a well sampled phylogeny of the iconic genus Ceiba, one of the most characteristic tree genera of neotropical Seasonally Dry Tropical Forest (SDTF). C_LIO_LIThere is a clear phylogenetic signal for biome preference and geographic structure in Ceiba. C_LIO_LIWe estimate a mid Miocene origin for Ceiba, with the stem node age of the genus estimated at 21.1 Ma and the crown node age at 12.7 Ma. C_LIO_LICeiba species have young stem ages in the SDTF clade but old stem ages in rain forest species. C_LIO_LIPatterns of species age, monophyly, ecological and geographical structure reported for SDTF species are only partially shared by Ceiba, an iconic genus of neotropical SDTF. C_LI

Source connections

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Flavia Fonseca Pezzini, Kyle G. Dexter, Jefferson G. Carvalho-Sobrinho, Catherine A. Kidner, James A. Nicholls, Luciano P. Queiroz, R. Toby Pennington. 2020-07-10. Phylogeny and biogeography of Ceiba Mill. (Malvaceae, Bombacoideae). https://doi.org/10.1101/2020.07.10.196238

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

Geometry of antigenic evolution improves influenza vaccine selection

Anticipating antigenic evolution is essential for selecting effective seasonal influenza A/H3N2 vaccine strains. To this end, we integrated hemagglutination-inhibition and neutralization titers spanning 2002 to 2025 into a unified Bayesian antigenic map. The map resolves twelve antigenic clusters advancing in discrete steps, with several clusters co-circulating in most seasons. In 15 of 21 seasons, the WHO-recommended vaccine belonged to an earlier cluster than the dominant circulating cluster. The direction of each vaccine update relative to recent viral drift predicted vaccine effectiveness one season ahead in out-of-sample forecasts. Antigenic distance, the conventional measure of vaccine-virus match, was weakly associated with effectiveness until update direction was accounted for. Retrospectively ranking candidate strains by predicted effectiveness would have selected a strain predicted to outperform the WHO recommendation in every season, raising mean predicted effectiveness by 10 percentage points.

evolutionary biology

Evolutionary replay of duplicate-gene retention across independent whole-genome duplications

Whole-genome duplications repeatedly expose ancestral gene lineages to the same broad evolutionary outcome-retention or loss of duplicated copies-but it remains unclear whether this history replays similarly across evolutionary scales. We placed duplicate retention in shared hierarchical orthologous-group coordinates and compared percentile ranks defined within each event-wide mapped universe. Three independent angiosperm whole-genome duplications showed reproducible replay (global rank effect T-replay = 0.210, bootstrap 95% confidence interval 0.172-0.248; permutation P = 1/100,001). A plant reference-panel score specified before target outcomes were examined predicted retention after the Apple/Pear duplication ({rho} = 0.169, n = 373). Deep transfer was heterogeneous: the teleost-genome-duplication estimate was positive but unresolved ({rho} = 0.107, n = 151, 95% confidence interval -0.050 to 0.260), whereas transfer to the ancient budding-yeast whole-genome duplication (yeast WGD) was supported ({rho} = 0.280, n = 186). Independently reconstructed animal outcomes also replayed between teleost and Stylommatophora duplications (r = 0.226, n = 146, P = 0.00326), although the effect remained below a prespecified strong-effect threshold. A strict plant-animal comparison was limited to 25 deeply one-to-one lineages and was unresolved (r = 0.033, 95% confidence interval -0.303 to 0.340). Thus, ancestral gene-lineage identity contributes reproducibly to duplicate retention after independent whole-genome duplications, but replay is structured by evolutionary lineage and modified by event-specific history rather than governed by one universal gene-fate ranking.

evolutionary biology

A Hymenoptera-restricted gene mediating ant castes co-opts deeply conserved machinery to control organ size

Lineage-specific genes are widespread and have been implicated as phenotypic innovation inducers, but how they acquire complex developmental functions remains poorly understood. Ant queens and workers develop dramatically different organ sizes from identical genomes under juvenile hormone (JH) control, yet the molecular effectors translating JH signalling into caste-specific organ growth remain unknown. Here we identify torch, a Hymenoptera-restricted gene, as the most consistently gyne-biased and JH-responsive gene across 68 ant species. Knockdown of torch in virgin queens of Monomorium pharaonis produces a worker-like, multi-organ growth-restricted phenotype. Mechanistically, torch harbours an E-box-like motif activated by the JH receptor Gce-Tai and acts as a GA-repeat-binding transcription factor that regulates Hippo signalling, the deeply conserved organ-size control pathway in animals. Expressing torch heterologously in mice and a growth-restricted Drosophila background shows that the gene retained its general growth-promoting activity across more than 700 million years of animal evolution in lineages that lack the gene, establishing that its function is mediated through conserved rather than ant-specific machinery. A lineage-specific gene can therefore acquire complex morphogenetic function by co-opting ancient organ-size circuitry, providing a general route by which novel genes can drive phenotypic innovation.

evolutionary biology